View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5250_high_7 (Length: 444)
Name: NF5250_high_7
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_high_7 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 27423666 - 27424091
Alignment:
| Q |
1 |
agttaatattcatcatagtaaatcaagattcaagatgaaattcatgtttgaaaatagatatacactagacattcatatcaattgagtttagttttgtatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27423666 |
agttaatattcatcatagtaaatcaagattcaaaatgaaattcatgtttgaaaatagatatacactagacattcatatcaattgagtttagttttgtatc |
27423765 |
T |
|
| Q |
101 |
gaatcgtggtatgacttgcatgtatcgtaagatattgataaccaagcttatgtctattattttatagttcaaaattattttttgtggagcttcaaatata |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27423766 |
gaatcgtggtatggcttgcatgtatcgtaagatattgataaccaagcttatgtctattaatttatagttcaaaattattttttgtggagcttcaaatata |
27423865 |
T |
|
| Q |
201 |
gaatcttattatgatttatgacagtttattatatatgtaatgttcagagaaatctaagggatttagctgagctatatggatgtgagttatccttgcaagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27423866 |
gaatcttattatgatttatgacagtttattatatatgtaatgttcagagaaatctaagggatttagctgagctatatggatgtgagttatccttgcaagg |
27423965 |
T |
|
| Q |
301 |
tgttgaaaaacaccgaaaagtctctggattggaattgtcatgttcaacatgtttcaaagctgcaagaatctctgctatactcatggatgatgggttagaa |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27423966 |
tgttgaagaacaccgaaaagtctctggattggaattgtcatgttcaacatgtttcaaagctgcaagaatctctgctatactcatggatgatgggttagaa |
27424065 |
T |
|
| Q |
401 |
ttggacaaaatgtatgatatagaatg |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27424066 |
ttggacaaaatgtatgatatagaatg |
27424091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 426
Target Start/End: Original strand, 27402661 - 27403074
Alignment:
| Q |
9 |
ttcatcatagtaaatcaagattcaagatgaaattcatgtttgaaaatagatatacactagacattcatatcaattgagtttagttttgtatcgaatcgtg |
108 |
Q |
| |
|
||||||||| | ||||||| |||||||| | ||||||||| | | ||||| |||||||| |||||||| || |||| ||||||||||| ||| | |
|
|
| T |
27402661 |
ttcatcataatgaatcaagtttcaagataagattcatgttcataga-agatacacactagaaattcatattgatacagttcagttttgtatctgttcgag |
27402759 |
T |
|
| Q |
109 |
gtatgacttgcatgtatcgtaagatattgataaccaagcttatgtctattat--tttatagttcaaaattattttttgtggagcttcaaa-tatagaatc |
205 |
Q |
| |
|
||||||| || |||||| |||||| |||||||||| |||||||| | || | |||| ||||||| ||||||| |||||| ||||||| ||| ||||| |
|
|
| T |
27402760 |
atatgactggcctgtatcttaagatcttgataaccatgcttatgtgtgttttagtttacagttcaaccttattttctgtggaacttcaaaatatggaatc |
27402859 |
T |
|
| Q |
206 |
ttattatgatttatgacagtttattatatatgtaa-tgttcagagaaatctaagggatttagctgagctatatggatgtgagttatccttgcaaggtgtt |
304 |
Q |
| |
|
|||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27402860 |
ttattatgat-------agtgtattatatatgcaaatgttcagagaaatctaagggatttagctgagctatatggatgtgagttatctttgcaaggtgtt |
27402952 |
T |
|
| Q |
305 |
gaaaaacaccgaaaagtctctggattggaattgtcatgttcaacatgtttcaaagctgcaagaatctctgctatactcatggatgatgggttagaattgg |
404 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27402953 |
gaagaacaccgaaaagtctctggattggaattgtcatgttcaacatgtttcaaagctgcaagaatctctgctatactcatggatgatgggtttgaattgg |
27403052 |
T |
|
| Q |
405 |
acaaaatgtatgatatagaatg |
426 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
27403053 |
acaaaatgcatgatatagaatg |
27403074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 24762338 - 24762230
Alignment:
| Q |
35 |
atgaaattcatgtttgaaaatagatatacactagacattcatatcaattgagtttagttttgtatcgaatcgtggtatgacttgcatgtatcgtaagata |
134 |
Q |
| |
|
|||| ||||||||| |||| |||||| |||||||| ||||||||||||||| ||||| || ||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
24762338 |
atgagattcatgttcgaaa-tagatacacactagagattcatatcaattgaatttagcattccatctaatcgagatatgacttgcatgtatcgtaagata |
24762240 |
T |
|
| Q |
135 |
ttgataacca |
144 |
Q |
| |
|
||||||||| |
|
|
| T |
24762239 |
ctgataacca |
24762230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 10931746 - 10931860
Alignment:
| Q |
28 |
attcaagatgaaattcatgtttgaaaatagatatacactagacattcatatcaattgagtttagttttgtatcgaatcgtggtatgacttgcatgtatcg |
127 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| | |||||||| ||||||||||||| | |||||||||| ||||||||| | || ||| |||| ||||| |
|
|
| T |
10931746 |
attcaagatgagattcatgttc-aaattaggcacacactagagattcatatcaattaaatttagttttgcatcgaatcgagatacaactagcatttatcg |
10931844 |
T |
|
| Q |
128 |
taagatattgataacc |
143 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10931845 |
taagatattgataacc |
10931860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 10582321 - 10582456
Alignment:
| Q |
8 |
attcatcatagtaaatcaagattcaagatgaaattcatgtttgaaaatagatatacactagacattcatatcaattgagtttagttttgtatcgaatcgt |
107 |
Q |
| |
|
||||||||||| ||||| || ||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||| | |||||||||||||| || |
|
|
| T |
10582321 |
attcatcatagagaatcaggactcaagatgagattcatgttc-aaaatagatacacactagagattcatatcgatttgatatagttttgtatcgagtcaa |
10582419 |
T |
|
| Q |
108 |
ggtatgacttgcatgtatcgtaagatattgataacca |
144 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
10582420 |
tatatgactcacatgtatcataagatactgataacca |
10582456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 28577235 - 28577149
Alignment:
| Q |
57 |
gatatacactagacattcatatcaattgagtttagttttgtatcgaatcgtggtatgacttgcatgtatcgtaagatattgataacc |
143 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| | |||||||| |||||| | ||||||| |||| |||| ||||| || ||||||| |
|
|
| T |
28577235 |
gatacacactagagattcatatcaattgagttcaattttgtattgaatcgggatatgactcgcatatatcctaagacatggataacc |
28577149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 30083625 - 30083696
Alignment:
| Q |
73 |
tcatatcaattgagtttagttttgtatcgaatcgtggtatgacttgcatgtatcgtaagatattgataacca |
144 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| | | ||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
30083625 |
tcatatgaattgagttaagttttgtatcaaattgagatatgacttgcatgtatcataagatactaataacca |
30083696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 8688254 - 8688175
Alignment:
| Q |
8 |
attcatcatagtaaatcaagattcaagatgaaattcatgtttgaaaatagatatacactagacattcatatcaattgagttt |
89 |
Q |
| |
|
|||||||||| | ||||| |||||||||||| ||||||| || ||||||||| ||| |||| |||||||||||||| |||| |
|
|
| T |
8688254 |
attcatcataatgaatcaggattcaagatgagattcatg--tgcaaatagatacacaatagagattcatatcaattgggttt |
8688175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 41042658 - 41042590
Alignment:
| Q |
76 |
tatcaattgagtttagttttgtatcgaatcgtggtatgacttgcatgtatcgtaagatattgataacca |
144 |
Q |
| |
|
||||||||||||| | |||| ||||||||| | || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
41042658 |
tatcaattgagttcaattttctatcgaatcaagatacgactcgcatgtatcgtaagatactgataacca |
41042590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 71116 - 71180
Alignment:
| Q |
70 |
cattcatatcaattgagtttagttttgtatcgaatcgtggtatgacttgcatgtatcgtaagata |
134 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||| | | | ||||||||||||| |||||||| |
|
|
| T |
71116 |
cattcatatcgattgaatttagttttgtatcaaattgagagacgacttgcatgtattgtaagata |
71180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University