View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5250_low_1 (Length: 746)
Name: NF5250_low_1
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 142 - 742
Target Start/End: Original strand, 781255 - 781872
Alignment:
| Q |
142 |
tataggaccaaatttcatcctaaaaatcagtaaaagataaaaataaatgtgttgtaaagttaagtgtacaactcatgcttaaaaagagtgtataatttag |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
781255 |
tatatgaccaaatttcatcctaaaaatcagtaaaagataaaaataaatgtgttgtaaagttaagtgtacaactcatgcttaaaaagagtgtataatttag |
781354 |
T |
|
| Q |
242 |
atggtaaaatgatacggagaaatttgatatgttctggtgtaggttcattagaa-------ctttaattctaaatttttcaacatttagtgtgtgtagttt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
781355 |
atggtaaaatgatacggagaaatttgatatgttgcggtgtaggtttattagaagttagaactttaattctaaatttttcaatatttagtgtgtgtagttt |
781454 |
T |
|
| Q |
335 |
taccgtactcttcgaaacaaatata------------ttttgagaataaatagttaacgtgaaactaatcatatattatgggaatgaaggaagattgtaa |
422 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
781455 |
tacc-tactcttcgaaacaaataaaaataaaaccaaattttgagaataagtagttaccgtgaaactaatcatatattatgggaatgaaggaagattgtaa |
781553 |
T |
|
| Q |
423 |
gttatgatataaccatttaaatatatcttaatcttatagttgatcaataagattttataaaattattgagacactttttaaggtctctagtatgtcattg |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
781554 |
gttatgatataaccatttaaatatatcttaatctcatagttgatcaataagattttataaaattattgagacactttttaaggtctctagtatgtcattg |
781653 |
T |
|
| Q |
523 |
tatgtttggttcaacataagggtagatggtaaatatttaagagtagatatggtaaatatttgtcattcttattgtgaaacggatatgatgtgatcttagc |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
781654 |
tatgtttggttcaacataagggtagatggtaaatatttaagagtagatatggtaaatatttgtcattcttattgtgaaacggatatgatgtgatcttggc |
781753 |
T |
|
| Q |
623 |
gatacttatactttgtatgagacttgtaagatccacattatgcaattaattcttgctgannnnnnnnnnaagagtaacttctagtttaattttctcgtat |
722 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
781754 |
aatacttatactttgtatgagacttgtaaggtccacattatgcaattaattcttgctga-tttttttttaagagtaacttctagtttaattttctcgtat |
781852 |
T |
|
| Q |
723 |
tcatcttatattcttcgaca |
742 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
781853 |
tcatcttatatgcttcgaca |
781872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 781084 - 781208
Alignment:
| Q |
20 |
agtttattctccactaccatttttatttcttggttgttccatttttgtgctttcctttgcttatgggcattcccaccctattaatgatttcaggactgag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
781084 |
agtttattctccactaccatttttatttcttggttgttccatttttgtgctttcctttgcttatgggcattcccaccctattaatgatttcaggactgag |
781183 |
T |
|
| Q |
120 |
tggggcttgaaacaaacattaatat |
144 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
781184 |
tggggcttgaaacaaacattaatat |
781208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University