View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250_low_16 (Length: 202)
Name: NF5250_low_16
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 28435378 - 28435503
Alignment:
| Q |
68 |
ttctttgtaactcgaattctcattaaatattcaacatttgcatgcttcaaatcctttcatctcctccatattcttcatttaggtaatctcattttgctat |
167 |
Q |
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| T |
28435378 |
ttctttgtaactcaaactctcattaaatattcaacatttgcatgcttcaaatcctttcatctcctccataatcttcatttaggtaatctcattttactat |
28435477 |
T |
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| Q |
168 |
tgttgttttagagtcacaggttctgc |
193 |
Q |
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| T |
28435478 |
tgttgttttagagtcacggtttctgc |
28435503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 28435278 - 28435323
Alignment:
| Q |
19 |
ataaaagcttcatatctttcacgtattgttacaagaattatttcct |
64 |
Q |
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| T |
28435278 |
ataaaagcttcatatctttcacgtattgttacaagaattatttcct |
28435323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 53968948 - 53968854
Alignment:
| Q |
61 |
tccttcattctttgtaactcgaattctcattaaatattcaacatttgcatgcttcaaatcctttcatctcctccatattcttcatttaggtaatc |
155 |
Q |
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| T |
53968948 |
tccttcattctttgtaactcgaactctcttattaaattcaacactttcatacttcaaatcctttcagctcctgcatattcttccattaggtaatc |
53968854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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