View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5250_low_2 (Length: 654)

Name: NF5250_low_2
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5250_low_2
NF5250_low_2
[»] chr6 (14 HSPs)
chr6 (413-608)||(1898771-1898966)
chr6 (404-599)||(1903985-1904181)
chr6 (404-599)||(1908218-1908414)
chr6 (197-354)||(1899070-1899227)
chr6 (413-546)||(1888271-1888404)
chr6 (411-547)||(1914150-1914285)
chr6 (428-543)||(1893124-1893239)
chr6 (427-604)||(1880913-1881090)
chr6 (256-305)||(1904309-1904358)
chr6 (256-305)||(1908542-1908591)
chr6 (33-76)||(1904970-1905014)
chr6 (33-76)||(1909203-1909247)
chr6 (76-107)||(1899493-1899524)
chr6 (444-519)||(1919164-1919239)
[»] chr3 (1 HSPs)
chr3 (78-106)||(44240209-44240237)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 413 - 608
Target Start/End: Complemental strand, 1898966 - 1898771
Alignment:
Q  413 aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1898966 aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtg 1898867  T
Q  513 gcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcctagaaaaaga 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898866 gcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcctagaaaaaga 1898771  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 404 - 599
Target Start/End: Complemental strand, 1904181 - 1903985
Alignment:
Q  404 tttcaagcaaagaatcaaatgcaaaaa-ttgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataaca 502  Q
    ||||||||||||||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  1904181 tttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataaca 1904082  T
Q  503 atttgaagtggcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct 599  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| | ||||||| |||||||| ||||| ||||    
T  1904081 atttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct 1903985  T

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Target: chr6; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 404 - 599
Target Start/End: Complemental strand, 1908414 - 1908218
Alignment:
Q  404 tttcaagcaaagaatcaaatgcaaaaa-ttgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataaca 502  Q
    ||||||||||||||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  1908414 tttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataaca 1908315  T
Q  503 atttgaagtggcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct 599  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| | ||||||| |||||||| ||||| ||||    
T  1908314 atttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct 1908218  T

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Target: chr6; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 1899227 - 1899070
Alignment:
Q  197 acggtttttgttaaaggtatttccagtttgattccaaaaagaatcagttcggnnnnnnngtaaaggtattttcagctcggtagaaaaccacataatcggt 296  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||    
T  1899227 acggtttttgttaaaggtatttcaagtttgattccaaaaagaatcagttcggtttttttgtaaaggtattttcagctcggttgaaaaccacataatcggt 1899128  T
Q  297 gcactaaacggtttggaacgaaccattaacagttctgttgagttttatcaaattgttg 354  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  1899127 gcactaaacggtttggaacgaaccattaacaattcagttgaattttatcgaattgttg 1899070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 413 - 546
Target Start/End: Complemental strand, 1888404 - 1888271
Alignment:
Q  413 aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtg 512  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||  ||| || |||||||||||||||| ||||    
T  1888404 aagaatccaattcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtg 1888305  T
Q  513 gcttgaatgaggttacatagactgccccctttaa 546  Q
    |||||||||| ||||||||||| || ||||||||    
T  1888304 gcttgaatgatgttacatagacagctccctttaa 1888271  T

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Target: chr6; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 411 - 547
Target Start/End: Complemental strand, 1914285 - 1914150
Alignment:
Q  411 caaagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaag 510  Q
    ||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||| ||||| || || | | |||| ||||||||||| ||    
T  1914285 caaagaatcaaatgcaaaa-ttgaattaaccataccttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcag 1914187  T
Q  511 tggcttgaatgaggttacatagactgccccctttaag 547  Q
    |||||||||||||||||||||||| ||||||||||||    
T  1914186 tggcttgaatgaggttacatagacagccccctttaag 1914150  T

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Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 428 - 543
Target Start/End: Complemental strand, 1893239 - 1893124
Alignment:
Q  428 aaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggtta 527  Q
    ||||| |||| || ||||||||||| ||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||||||||    
T  1893239 aaattaaattaaccataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtta 1893140  T
Q  528 catagactgccccctt 543  Q
    ||||||| ||||||||    
T  1893139 catagacagccccctt 1893124  T

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Target: chr6; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 427 - 604
Target Start/End: Complemental strand, 1881090 - 1880913
Alignment:
Q  427 aaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggtt 526  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||| |||||| | ||| || ||||||  |||||||| |||||||||||||| |||    
T  1881090 aaaattgaataaaccataccttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgtt 1880991  T
Q  527 acatagactgccccctttaagcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcctagaaa 604  Q
    |||||||| || ||||||||||| | || ||| ||| |||||  | ||| ||| || |||||||||||  ||||||||    
T  1880990 acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaaa 1880913  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 1904358 - 1904309
Alignment:
Q  256 gtaaaggtattttcagctcggtagaaaaccacataatcggtgcactaaac 305  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1904358 gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac 1904309  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 1908591 - 1908542
Alignment:
Q  256 gtaaaggtattttcagctcggtagaaaaccacataatcggtgcactaaac 305  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1908591 gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac 1908542  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 1905014 - 1904970
Alignment:
Q  33 tatacacaaatgaacactttaacaatcatt-taatcagaaatgag 76  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  1905014 tatacacaaatgaacactttaacaatcattgaaatcagaaatgag 1904970  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 1909247 - 1909203
Alignment:
Q  33 tatacacaaatgaacactttaacaatcatt-taatcagaaatgag 76  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  1909247 tatacacaaatgaacactttaacaatcattgaaatcagaaatgag 1909203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 1899524 - 1899493
Alignment:
Q  76 gacttatactagtagataaactcaaataagtt 107  Q
    ||||||||||||||||||||||||||||||||    
T  1899524 gacttatactagtagataaactcaaataagtt 1899493  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 519
Target Start/End: Complemental strand, 1919239 - 1919164
Alignment:
Q  444 accttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaa 519  Q
    ||||||||| ||||||||||||||||||||||| || ||| |   || ||| ||||||||||  ||||||||||||    
T  1919239 accttccaatatgaagagtatcaccaaggaacaaaatacccatagcaacagcaataacaattgaaagtggcttgaa 1919164  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 44240209 - 44240237
Alignment:
Q  78 cttatactagtagataaactcaaataagt 106  Q
    |||||||||||||||||||||||||||||    
T  44240209 cttatactagtagataaactcaaataagt 44240237  T

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