View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250_low_4 (Length: 462)
Name: NF5250_low_4
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 53 - 269
Target Start/End: Complemental strand, 51011590 - 51011379
Alignment:
| Q |
53 |
gcaattatggaaagtttaactactgaaactgcatcaattttctctgatgttgatgtcatcttatgattccgatttgttccgtgtcagctctagtagtgaa |
152 |
Q |
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| T |
51011590 |
gcaattatggaaagtttaactactgaaactgcatcaattttctctgatgttgatgtcatcttatgattccgatttgttccgtgtcagctctagtagtgaa |
51011491 |
T |
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| Q |
153 |
tctctaacttcttcagcctcaactatctcactctcctttttctgttagtaagaaatattagtatcattattatcacatcatactttgaattgatttgatg |
252 |
Q |
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| T |
51011490 |
tctctaacttcttcagcctcaactatctcactctcctttttctgttagtaagaaatattagtatcattattatcacatcatact-----ttgatttgatg |
51011396 |
T |
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| Q |
253 |
tagtctaacaaattcat |
269 |
Q |
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| T |
51011395 |
tagtctaacaaattcat |
51011379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 309 - 454
Target Start/End: Complemental strand, 51011277 - 51011132
Alignment:
| Q |
309 |
aatgttttgaaggtatattatatttacctcaactttaaaaacatttgagacaagacccttatgactggttactgtggcatgcattacatccatgcctaaa |
408 |
Q |
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| T |
51011277 |
aatgttttgaaggtatattatatttacctcaactttaaaaacatttgagacaagacccttatgactggttactgtggcatgcattacatccatgcctaaa |
51011178 |
T |
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| Q |
409 |
gtgttgaaagcatccatcaatttcacaaaaccaccaggcctatgct |
454 |
Q |
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| T |
51011177 |
gtgttgaaagcatccatcaatttcacaaaaccaccaggcctatgct |
51011132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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