View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250_low_5 (Length: 460)
Name: NF5250_low_5
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 38369831 - 38370075
Alignment:
| Q |
7 |
gattattcttaaactggagttctaccagacgcattagaacttatccaaaactgggaatgtttcatacaatccaccaatcacgcatatagtgttataagtg |
106 |
Q |
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| T |
38369831 |
gatttttcttaaactggagttctaccagacgcattagaacttatccaaaactaggaaagtttcatacaatccaccaatcacgcatatagtgttataagtg |
38369930 |
T |
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| Q |
107 |
taaatggcatttaattagcacattaaaagtttggttgatgttcaagagagtagttcaagtagttgagcatccaaaaaactttaagaaggaattatctaga |
206 |
Q |
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| T |
38369931 |
taaatggcatttaattagcacattaaaagtttggttgatgttcaagagagtagttcaagtagttgagcatccaaaaaactttaa-aaggaattatctaga |
38370029 |
T |
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| Q |
207 |
gtcaaaacttgtttgaagtgtggaaaagtttcacgagcaacaatag |
252 |
Q |
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| T |
38370030 |
gtcaaaacttgtttgaagtgtggaaaagtttcacgagcaacaatag |
38370075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 38370126 - 38370188
Alignment:
| Q |
379 |
atattcttaatttgttgaagttttgggtggagatgtggtgtttgtctctcttgtggtccctag |
441 |
Q |
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| T |
38370126 |
atattcttaatttgttgaagttttgggtggagatgtggtgtttgtctctcttgtggtccctag |
38370188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 38370094 - 38370130
Alignment:
| Q |
319 |
tgattagtcttacataactatgaatgaattaaatatt |
355 |
Q |
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| T |
38370094 |
tgattagtcttacataactatgaatgaattaaatatt |
38370130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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