View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250_low_8 (Length: 377)
Name: NF5250_low_8
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 41597133 - 41596787
Alignment:
| Q |
13 |
catcactaatattactattactcaaattcaaaccatgatttggaacaataaattgagacttcactgaattaaaaccagaatcaccaccagaaactggtgt |
112 |
Q |
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| T |
41597133 |
catcactaatattactattactcaaattcaaaccatgatttggaacaataaattgagacttcactgaattaaaaccagaatcaccaccagaaactggtgt |
41597034 |
T |
|
| Q |
113 |
atcaggtgaaagaggctttaactcattagaactagaactattaccagaatcagtagtaacacaacaactgctattaggaatctcaagaacatcaagaggg |
212 |
Q |
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| T |
41597033 |
atcaggtgaaagaggctttaactcattagaactagaactattaccagaatcagtagtaacacaacaagtgctattaggaatctcaagaacatcaagaggg |
41596934 |
T |
|
| Q |
213 |
tgttgattaggtgaaagaggcaaatttgattccaaagcatcaaagaaaattttctcagtatgttgaagactaagtggatcataacacatacatggttttt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41596933 |
tgttgattaggtgaaagaggcaaatttgattccaaagcatcaaagaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggttttt |
41596834 |
T |
|
| Q |
313 |
gttcaaaatcttcttccattaaaatctggcttatatatttcactgtt |
359 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41596833 |
gttcaaattcttcttccattaaaatctggcttatatatttcactgtt |
41596787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 181 - 357
Target Start/End: Complemental strand, 27326226 - 27326056
Alignment:
| Q |
181 |
tgctattaggaatctcaagaacatcaagagggtgttgattaggtgaaagaggcaaatttgattccaaagcatcaaagaaaattttctcagtatgttgaag |
280 |
Q |
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||||| |||||||||||||||||| |||||||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
27326226 |
tgctactaggaatctcaagaacatgaagagggtgtgaattaggtgcaaga--caaatttaattctaaagcatcaaagaaaattttctcagta----gaag |
27326133 |
T |
|
| Q |
281 |
actaagtggatcataacacatacatggtttttgttcaaaatcttcttccattaaaatctggcttatatatttcactg |
357 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
27326132 |
actaagcgggtcataacacatacatggtttttgttcaaaatctttttccatcaaaatatggcttatatatttcactg |
27326056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 28916484 - 28916381
Alignment:
| Q |
256 |
agaaaattttctcagtatgttgaagactaagtggatcataacacatacatggtttttgttcaaaatcttcttccattaaaatctggcttatatatttcac |
355 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
28916484 |
agaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtatttgttcaaaatcttctaacattagaatctggcttatatatttcaa |
28916385 |
T |
|
| Q |
356 |
tgtt |
359 |
Q |
| |
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|||| |
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|
| T |
28916384 |
tgtt |
28916381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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