View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251-Insertion-1 (Length: 420)
Name: NF5251-Insertion-1
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251-Insertion-1 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 34473478 - 34473890
Alignment:
| Q |
8 |
ctaacaacatgaaagcaaggtaaaatcagaccaacttctatcaaaaagaaaaccacacaagcttcattctttattttcacatacatccaaagtgagaagg |
107 |
Q |
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| T |
34473478 |
ctaacaacatgaaagcaaagtaaaatcagaccaacttctatccaaaagaaaaccacacaagcttcattctttattttcacatacatccaaaatgagaagg |
34473577 |
T |
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| Q |
108 |
ataacttatattacaagttattattgcttattttcctgtgcttattggatctatgagaagtgcaaaaacacagtctttcaacagttccccatttgtgtct |
207 |
Q |
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| T |
34473578 |
gtaacttatattacaagttattattgcttatcttcctgtgcttattggatctatgagaagtgcaacaacatagtctttcaacagttccccatttgtgtat |
34473677 |
T |
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| Q |
208 |
ttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggttggggatttagtctaacttgaggcactctt |
307 |
Q |
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| T |
34473678 |
ttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggttggggatgtagtctaacttgaggaactctt |
34473777 |
T |
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| Q |
308 |
catttatatccatccaaaaatcttctatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattctactgctga |
407 |
Q |
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| T |
34473778 |
catttatatccatccaaaaatcttcaatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattcaactgctgc |
34473877 |
T |
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| Q |
408 |
agcaatatgcacc |
420 |
Q |
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| T |
34473878 |
agcaacatgcacc |
34473890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 419
Target Start/End: Original strand, 34448397 - 34448617
Alignment:
| Q |
199 |
tttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggttggggatttagtctaacttga |
298 |
Q |
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| T |
34448397 |
tttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttga |
34448496 |
T |
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| Q |
299 |
ggcactcttcatttatatccatccaaaaatcttctatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattc |
398 |
Q |
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| T |
34448497 |
gacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattc |
34448596 |
T |
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| Q |
399 |
tactgctgaagcaatatgcac |
419 |
Q |
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| T |
34448597 |
cactgcagaagcaacatgcac |
34448617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 420
Target Start/End: Original strand, 34459683 - 34459851
Alignment:
| Q |
252 |
attaagaatacattcaagcacagggttggggatttagtctaacttgaggcactcttcatttatatccatccaaaaatcttctatgtccttgttaatgtgc |
351 |
Q |
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| T |
34459683 |
attaagaatacattcaagcactggccttggaatgtggtgtaattttaggcactcttcattcataactctccataaatcttcaatctccttgagaatgagt |
34459782 |
T |
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| Q |
352 |
ttataggcctcttcttgtgacatgttgtattgcttcatgcaacattctactgctgaagcaatatgcacc |
420 |
Q |
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| T |
34459783 |
ttataagcctcttcttgtgatatgtcatattgcttcatgcaacaatcaactgcagaggcaacatgcacc |
34459851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 34483710 - 34483834
Alignment:
| Q |
148 |
cttattggatctatgagaagtgcaaaaacacagtctttcaacagttccccatttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtg |
247 |
Q |
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| T |
34483710 |
cttataggatctataagtagtgcaacaatgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaactctgttattcgtg |
34483809 |
T |
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| Q |
248 |
ccacattaagaatacattcaagcac |
272 |
Q |
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| T |
34483810 |
ccacattaagaataatttcaagcac |
34483834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 148 - 417
Target Start/End: Original strand, 1593083 - 1593352
Alignment:
| Q |
148 |
cttattggatctatgagaagtgcaaaaacacagtctttcaacagttccccatttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtg |
247 |
Q |
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| T |
1593083 |
cttatgggatctattagaagtgcaataatgtggtcttttaagagttccccgttggtatatttatccttgtaatcttcataagtgaactcggttactcttg |
1593182 |
T |
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| Q |
248 |
ccacattaagaatacattcaagcacagggttggggatttagtctaacttgaggcactcttcatttatatccatccaaaaatcttctatgtccttgttaat |
347 |
Q |
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| T |
1593183 |
ctacgttcaccatacattcaagcacggacttggggatgaagtctaactcgaggcactctttatttatatccatccaaccaatttcaatgtccttgttgat |
1593282 |
T |
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| Q |
348 |
gtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattctactgctgaagcaatatgc |
417 |
Q |
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| T |
1593283 |
gagtttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgc |
1593352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 179 - 419
Target Start/End: Complemental strand, 6132420 - 6132180
Alignment:
| Q |
179 |
agtctttcaacagttccccatttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggtt |
278 |
Q |
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| T |
6132420 |
agtctttcagcaattccccatttgtgtatttatcctcaaagttttcgtatgtgaactcggctactcgcgccacattaacaatactttcgaccactgggct |
6132321 |
T |
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| Q |
279 |
ggggatttagtctaacttgaggcactcttcatttatatccatccaaaaatcttctatgtccttgttaatgtgcttataggcctcttcttgtgacatgttg |
378 |
Q |
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| T |
6132320 |
tgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcgatctctttcagaatgagtttgtaagcttcctcttgtgacatatca |
6132221 |
T |
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| Q |
379 |
tattgcttcatgcaacattctactgctgaagcaatatgcac |
419 |
Q |
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| T |
6132220 |
tattgcttcatgcaacattcaactgcagaagcaacatgcac |
6132180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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