View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251-Insertion-2 (Length: 388)
Name: NF5251-Insertion-2
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 4792854 - 4792471
Alignment:
| Q |
7 |
acaaactcgtcctcaaacaaa--acattgaaaggggttaatgtttatttggcagggttaatgcttatttgacatgccacaacgtgaaagtttgggagact |
104 |
Q |
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| T |
4792854 |
acaaactcgtcctcaaacaaagaacattgaaaggggttaatgcttatttggcagggttaatgcttatatgacatgccacaacgtgaaagtttgggaggct |
4792755 |
T |
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| Q |
105 |
atgttgaatgagtttggacttccactaggacttcttccactcgccgatgtaatcgaagttagttttgttagaaacaccggttacatgcgtatctagcaga |
204 |
Q |
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| T |
4792754 |
atgttgaatgagtttggacttccactaggacttcttccactcgccgatgtaatcgaagttagttttgttagaaacaccgattacatgcgtatcttgcaga |
4792655 |
T |
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| Q |
205 |
agaagaaagttgaacacacctttaaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaa |
304 |
Q |
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| T |
4792654 |
agaagaaagttgaacacaactttaaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaa |
4792555 |
T |
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| Q |
305 |
aggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcactt |
388 |
Q |
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| T |
4792554 |
aggggtgaaagccaaagaactcatgctttggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcactt |
4792471 |
T |
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