View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251-Insertion-3 (Length: 346)
Name: NF5251-Insertion-3
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 15555959 - 15555620
Alignment:
| Q |
8 |
gtaactacagagtaaaaagaattaagtaagtttaacttatggaattagaccagaaaacacagataataactaaataaaattaaaccaaacaaagatacct |
107 |
Q |
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| T |
15555959 |
gtaactacaaagtaaaaagaattaagtaagtttaacttctggaattagaccagaacacacagataataactaaataaaattaaaccaaacaaagatacct |
15555860 |
T |
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| Q |
108 |
ctttttgacaccattaaaactcttttgaatttgctcctttgcttgatccattgcttcatagatgaatcccatggctggtt-ttttatctgagtcagccaa |
206 |
Q |
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| T |
15555859 |
ctttttgacaccattaaaactcttttgaatttgctcctttgcttgatccattgcttcatagatgaatcccatggctggtttttttatctaagtcagccaa |
15555760 |
T |
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| Q |
207 |
acgaagcactttcatgagaggagtcgcacccttcaagcaaattacaatatcgttccaaaactttttatccaaaatcatatcttcaagagctttcccatct |
306 |
Q |
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| T |
15555759 |
acgaagcactttcatgagaggagtcgcacccttcaaacaaattacaatatccttccaaaactttttatccaaaataatatcttcaagagctttcccatct |
15555660 |
T |
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| Q |
307 |
cttaacttggcacattagctggacttccactccttggaag |
346 |
Q |
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| T |
15555659 |
cttaacttggcacatttgccggacttccattccttggaag |
15555620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 8989037 - 8989327
Alignment:
| Q |
8 |
gtaactacagagtaaaaagaattaagtaagtttaacttatggaattagaccagaaaacacagataataactaaataaaattaaaccaaacaaagatacct |
107 |
Q |
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| T |
8989037 |
gtaactacaaagtaaaaataattaagt---tttaacttttggaattagaccagatcacata-----taactaaataaaattaaaccaaacaaagatgtct |
8989128 |
T |
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| Q |
108 |
ctttttgacaccattaaaactcttttgaatttgctcctttgcttgatccattgcttcatagatgaatcccatggctgg-ttttttatctgagtcagccaa |
206 |
Q |
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| T |
8989129 |
ccttttgacaccattaaaattcttttgaatttgctcctttgcttgatccattgcttcatagatgaatctcatggctggtttttttatctgagtcaaccaa |
8989228 |
T |
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| Q |
207 |
acgaagcactttcatgagaggag----tcgcacccttcaagcaaattacaatatcgttccaaaactttttatccaaaatcatatcttcaagagctttcc |
301 |
Q |
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| T |
8989229 |
acgaagaacttttatgagaggcgtcgatcgcacccctcaaacatattacaatatccttccaaaacactttatccaagatcatatttttaagagctttcc |
8989327 |
T |
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