View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251_high_1 (Length: 463)
Name: NF5251_high_1
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 5895651 - 5895313
Alignment:
| Q |
11 |
acaatattcccaatcaatctcttccactttgcactttctcttccattcccaacaccagccattccaaattccatacaaaccctaatgtcaaccatttctc |
110 |
Q |
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| T |
5895651 |
acaaaattcccaatcaatctcttccactttgcactttctcttccattcccaacacctaccattccaaattccatacaaaccctaatttcaaccatttctc |
5895552 |
T |
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| Q |
111 |
ttccgaaccc--------taataccatggatatattctcaaaactcaaatatcttagtgccatcaacaaagacctcgatttaaatcacgtttcgattagt |
202 |
Q |
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| T |
5895551 |
ttccgaacccgttctcgctaacaccgtggatatattctcaaaactcaaatatcttagtgccatcaacaaagacctcgattcaaatcacgtttcgattagt |
5895452 |
T |
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| Q |
203 |
cacgctgctgttaacgcaaggaagtttgaaaagggtggaatggatggtgaggctgtgaaatccatggaattgtttgataaggatacatttgagaggatat |
302 |
Q |
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| T |
5895451 |
cacgatgctgtcaacggaaggaagtttgaaaagtgtggaatggatggtgaggctgtgaaatccagggaattgtttgataaggatagatttgagaggatat |
5895352 |
T |
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| Q |
303 |
attctcg-caaatatttcaaattcgccaccctttatcaa |
340 |
Q |
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| T |
5895351 |
attctcgaaaaaaatttcaaattccccaccccttatcaa |
5895313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 342 - 442
Target Start/End: Complemental strand, 5895269 - 5895170
Alignment:
| Q |
342 |
atttgttgagttggccttgcaaaatttagaatatgcgccgaataaagctctaatatttttcaggtgggtggagaagagtgggcaatttaagcatgacgaa |
441 |
Q |
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| T |
5895269 |
atttgttgagttggccttacaaaatttagaa-atgtgcctagtaaagctttaatatttttcaggtgggtggagaagagtgggcagtttaagcatgacgaa |
5895171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 5880996 - 5880924
Alignment:
| Q |
227 |
tttgaaaagggtggaatggatggtgaggctgtgaaatccatggaattgtttgataaggatacatttgagagga |
299 |
Q |
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| T |
5880996 |
tttgaaaagggtggaatgaatggtgatgctgtgaagttgaaggagttgtttgataaggatacagttgagagga |
5880924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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