View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5251_high_2 (Length: 460)

Name: NF5251_high_2
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5251_high_2
NF5251_high_2
[»] chr6 (17 HSPs)
chr6 (88-443)||(33390432-33390799)
chr6 (163-441)||(31566480-31566759)
chr6 (156-426)||(33641988-33642259)
chr6 (157-442)||(33306925-33307211)
chr6 (91-423)||(33402985-33403317)
chr6 (153-443)||(33059990-33060281)
chr6 (163-423)||(33412363-33412624)
chr6 (153-435)||(33288010-33288293)
chr6 (153-423)||(33360933-33361204)
chr6 (154-441)||(33265318-33265606)
chr6 (154-441)||(33274462-33274750)
chr6 (154-394)||(9169294-9169535)
chr6 (163-342)||(12781945-12782125)
chr6 (290-342)||(12781322-12781374)
chr6 (290-341)||(12785512-12785563)
chr6 (290-341)||(12786252-12786303)
chr6 (88-138)||(33642281-33642331)
[»] chr2 (2 HSPs)
chr2 (153-443)||(17438043-17438334)
chr2 (296-336)||(35105779-35105819)
[»] scaffold1749 (1 HSPs)
scaffold1749 (155-423)||(583-852)
[»] scaffold0428 (1 HSPs)
scaffold0428 (155-423)||(9344-9613)
[»] chr4 (13 HSPs)
chr4 (164-443)||(31496310-31496590)
chr4 (164-436)||(31501487-31501760)
chr4 (163-343)||(31020316-31020497)
chr4 (163-343)||(31489055-31489236)
chr4 (163-343)||(31030197-31030378)
chr4 (163-343)||(31162097-31162276)
chr4 (164-343)||(31476470-31476650)
chr4 (244-349)||(31529059-31529164)
chr4 (259-335)||(31482317-31482393)
chr4 (163-349)||(31150820-31151007)
chr4 (245-343)||(31159801-31159899)
chr4 (275-344)||(31244506-31244575)
chr4 (390-426)||(31159946-31159982)
[»] chr8 (1 HSPs)
chr8 (1-70)||(473841-473912)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 88 - 443
Target Start/End: Original strand, 33390432 - 33390799
Alignment:
Q  88 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctactnnnnnnnnnn-----------ctataaatttcttacttatcacgt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||| |    
T  33390432 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctacggaaaaaaaaaaaaaaaaaaaactataaatttcttacttatcacat 33390531  T
Q  177 agatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaag 275  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390532 agatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaag 33390631  T
Q  276 ctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggatccttggacgcattcccaaat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33390632 ctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggatccttggacacattcccaaat 33390731  T
Q  376 cttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacct 443  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390732 cttctctatttcttgcaaacaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacct 33390799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 163 - 441
Target Start/End: Complemental strand, 31566759 - 31566480
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatactc-ccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 261  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31566759 cttacttatcacgtagatcccaaccaaagatactcgccacttgttttagagcttctctccatcttgacaccatctgagagtcttgtcggaatctttgttc 31566660  T
Q  262 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggatccttgg 361  Q
    ||||||| ||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| | |      
T  31566659 atgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatcaacatcatagaaaacaagaagaacatgtttttcagattcctca 31566560  T
Q  362 acgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaac 441  Q
    | |||||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||| || |||||| ||||    
T  31566559 atgcattcacaaatcttctctaattcttgcaagcaccatgtcgaggaagcataatttcttgagaagacggcaacaaaaac 31566480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 156 - 426
Target Start/End: Complemental strand, 33642259 - 33641988
Alignment:
Q  156 taaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatc 254  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||    
T  33642259 taaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatc 33642160  T
Q  255 tttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcgga 354  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||  |    
T  33642159 tttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaacatgtttttctaa 33642060  T
Q  355 tccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaa 426  Q
    ||| |  | |||||| ||||||||||||| |||||| | ||||||||||||| |||||||||||||||||||    
T  33642059 tccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaa 33641988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 157 - 442
Target Start/End: Original strand, 33306925 - 33307211
Alignment:
Q  157 aaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatct 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | ||| ||||||||||||    
T  33306925 aaattacttacttatcacgtagatcccaaccagagatactccccacatgttttagagcttccctccatcttgacaccatctcaaagtcttgttggaatct 33307024  T
Q  256 ttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggat 355  Q
    |||||||||||||||||| |||| |  |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||  ||||    
T  33307025 ttgttcatgtttgacaaaggcttcacaataaatcccactttgctttcgaaccacagaaggatcaacatcataaaaaacaggaagaatatgttttctggat 33307124  T
Q  356 ccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacc 442  Q
    |  || |||||||  || |||||||||| |||||||| ||||||||||||| |||||||||| |||||||| || |||||| |||||    
T  33307125 ctctgaacgcatttacatatcttctctaattcttgcaggcaccatgttgaggaagcatagttccttgagaagactgcaacaaaaacc 33307211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 91 - 423
Target Start/End: Original strand, 33402985 - 33403317
Alignment:
Q  91 tgagtttctgttcaggactcgtgcaccatctcttcaacttatattttctactnnnnnnnnnnctataaatttcttacttatcacgtagatcccaaccaga 190  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||| ||||           ||||||||| |||||||||||| |||||||||||||||    
T  33402985 tgagtttctgtcctggactcgtgcaccatctcttcaccttatatttactac-aaaaaaaacactataaattacttacttatcacatagatcccaaccaga 33403083  T
Q  191 gatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttcatgtttgacaaaagctttatcataaatt 289  Q
     |||||||| ||||||||||||||||| ||||||||||||||||||| | ||  |||||||||||||| |||||| |||||||| |||| |  ||||||     
T  33403084 tatactccccacttgttttagagcttccctccatcttgacaccatctcaaagccttgttggaatcttttttcatgcttgacaaaggcttcacaataaata 33403183  T
Q  290 ccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggatccttggacgcattcccaaatcttctctatttctt 389  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||| |  |||||||| || |||||||||| |||||    
T  33403184 ccactttgctttcgaacctcagaaggatcaacatcatagaaaacaggaataacatgttttttggatcccttaacgcattcacatatcttctctaattctt 33403283  T
Q  390 gcaagcaccatgttgagaaagcatagtttcttga 423  Q
      ||||||||||||||| |||||||||| |||||    
T  33403284 ttaagcaccatgttgaggaagcatagttccttga 33403317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 153 - 443
Target Start/End: Original strand, 33059990 - 33060281
Alignment:
Q  153 ctataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 251  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||  ||||| ||||||||    
T  33059990 ctataaattacttactcatcacgtagatcccaaccagatatactccccacttgctctagagcttctctccatcttgacaccttcatagagtcttgttgga 33060089  T
Q  252 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttc 351  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||||| |    
T  33060090 atctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcc 33060189  T
Q  352 ggatccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacct 443  Q
     || || |  | |||||| || ||||| |||| ||||||||||||||| |||||| ||||||||||  ||||||| | |||||| |||||||    
T  33060190 cgaccccttaatgcattcacatatcttttctaattcttgcaagcaccacgttgaggaagcatagttctttgagaagatcgcaacgtaaacct 33060281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 163 - 423
Target Start/End: Original strand, 33412363 - 33412624
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 261  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||| | |||| || ||||||||||||||||||    
T  33412363 cttacttatcacgtagatcccaaccagagatactccccacttggtttaaagcttccctccatcttgacaccttatgagggtcttgttggaatctttgttc 33412462  T
Q  262 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggatccttgg 361  Q
    |||||||||||||| || |  |||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||  ||||||| | ||| ||     
T  33412463 atgtttgacaaaagattcacaataaatcccactttgcttccgcacctcagaaggatcaatatcataaaaaacaggaagaacgtgtttttcaggtccctga 33412562  T
Q  362 acgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttga 423  Q
    || ||||| || ||||| |||| |||||||| ||||||||||||| |||||||||| |||||    
T  33412563 acacattcacagatcttttctaattcttgcaggcaccatgttgaggaagcatagttccttga 33412624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 153 - 435
Target Start/End: Original strand, 33288010 - 33288293
Alignment:
Q  153 ctataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 251  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  33288010 ctataaattacttacttatcacatagatcccaaccagcgatactccccacttgttttagggcttccctccatcttgacaccatctgagagtcttgttgga 33288109  T
Q  252 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttc 351  Q
    || ||||||||||| ||  ||| |||| | ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||   |||||      
T  33288110 atgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaactggaagaatgtgttttct 33288209  T
Q  352 ggatccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaac 435  Q
     ||| | || || ||||| || ||||| |||| ||| |||||||||||||||||| ||||||||||||||||||| || |||||    
T  33288210 tgatacatgaacacattcacatatcttttctaattcctgcaagcaccatgttgaggaagcatagtttcttgagaatactgcaac 33288293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 153 - 423
Target Start/End: Original strand, 33360933 - 33361204
Alignment:
Q  153 ctataaatttcttacttatcacgtagatcccaaccagagata-ctcccacttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 251  Q
    |||||| || ||||||||||| |||||||||||||||||||| | |||||||| | ||||||||| |||||| |||||||| ||| ||||| ||||||||    
T  33360933 ctataagttacttacttatcatgtagatcccaaccagagatatcccccacttgctctagagcttccctccatattgacaccttcttagagtcttgttgga 33361032  T
Q  252 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttc 351  Q
    ||||||||||||||||||||||||||| |  ||||||  |||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||||| |    
T  33361033 atctttgttcatgtttgacaaaagcttcactataaatctcactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcc 33361132  T
Q  352 ggatccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttga 423  Q
     ||||| |  | |||||| || ||||| |||| ||||||||| |||||||||||| ||||||||||||||||    
T  33361133 tgatcccttaatgcattcacatatcttttctaattcttgcaaacaccatgttgaggaagcatagtttcttga 33361204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 154 - 441
Target Start/End: Original strand, 33265318 - 33265606
Alignment:
Q  154 tataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 252  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||   | |||||||||    
T  33265318 tataaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcgtccctccattttgacaccttctgatgttcttgttggaa 33265417  T
Q  253 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcg 352  Q
    ||||||||||||||||| ||| |||| | ||||||| |||||||||||||  || ||||| |||||||||||||| ||||| ||||||||| ||||| |     
T  33265418 tctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcct 33265517  T
Q  353 gatccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaac 441  Q
    ||||| |  |||||||| || ||||| |||| |||||| || |||||||||||| ||||||||||| |||| || ||||||||| ||||    
T  33265518 gatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaac 33265606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 154 - 441
Target Start/End: Original strand, 33274462 - 33274750
Alignment:
Q  154 tataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 252  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||   | |||||||||    
T  33274462 tataaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcgtccctccattttgacaccttctgatgttcttgttggaa 33274561  T
Q  253 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcg 352  Q
    ||||||||||||||||| ||| |||| | ||||||| |||||||||||||  || ||||| |||||||||||||| ||||| ||||||||| ||||| |     
T  33274562 tctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcct 33274661  T
Q  353 gatccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaac 441  Q
    ||||| |  |||||||| || ||||| |||| |||||| || |||||||||||| ||||||||||| |||| || ||||||||| ||||    
T  33274662 gatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaac 33274750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 154 - 394
Target Start/End: Original strand, 9169294 - 9169535
Alignment:
Q  154 tataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaa 252  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||| |||||||||| | |||  ||||||| ||||||||| ||||| | || || |||    
T  9169294 tatagattacttacttatcacgtaggtcccaaccagagatactccccacttgttttaaacctttcctccatcctgacaccatgtgagaatcttatttgaa 9169393  T
Q  253 tctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcg 352  Q
    |||||||||||||||| |||| |||| |  |||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||| |     
T  9169394 tctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaacaagaagaacatgttttcct 9169493  T
Q  353 gatccttggacgcattcccaaatcttctctatttcttgcaag 394  Q
    ||| |  | || ||||| || ||||| |||| ||||||||||    
T  9169494 gatacacgaacacattcacatatcttttctaattcttgcaag 9169535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 342
Target Start/End: Original strand, 12781945 - 12782125
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatact-cccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 261  Q
    |||||||||||||||||||||| ||||||||| | |||||| | | ||||| |||||||| ||||  |||||| |  ||||  | ||||||||| | | |    
T  12781945 cttacttatcacgtagatcccagccagagatattacccactagctgtagagtttctctccttctttgcaccatatttgagtgatcttggaatctctttcc 12782044  T
Q  262 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaac 342  Q
    ||| | |  ||| | || | |||||   |||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  12782045 atgatagttaaaggattcaccataaccaccactttgctttcgcacctcagaaagatcaacatcataaaaaacaggcagaac 12782125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 12781322 - 12781374
Alignment:
Q  290 ccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaac 342  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  12781322 ccactttgcttttgtacctcagaaggatcaacatcatagaaaacaggaagaac 12781374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 12785512 - 12785563
Alignment:
Q  290 ccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaa 341  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  12785512 ccactttgcttttgtacctcagaaggatcaacatcataaaaaataggaagaa 12785563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 12786252 - 12786303
Alignment:
Q  290 ccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaa 341  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  12786252 ccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa 12786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 33642331 - 33642281
Alignment:
Q  88 ctttgagtttctgttcaggactcgtgcaccatctcttcaacttatattttc 138  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  33642331 ctttgagtttctgttctagactcgtgcaccatctcttcaccttatattttc 33642281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 153 - 443
Target Start/End: Complemental strand, 17438334 - 17438043
Alignment:
Q  153 ctataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttgga 251  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||| |||||  || ||||||||    
T  17438334 ctataaattacttacttatcacgtagatcccaaccagcgatactccccacttgctttagagcttccctccatcttgacaccttctgaaggtcttgttgga 17438235  T
Q  252 atctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttc 351  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |    
T  17438234 atctttgttcatgtttgacaaaagcttcatgataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcc 17438135  T
Q  352 ggatccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacct 443  Q
     |   | || |||||||| || ||||| |||| ||||| ||| |||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  17438134 tggcacctgaacgcattcacatatcttttctaattcttccaaacaccatgttgaggaagcatagtatcttgagaaaaccgcaacaaaaacct 17438043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 35105779 - 35105819
Alignment:
Q  296 tgctttcgaacctcagaaggatcaacatcataaaaaacagg 336  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  35105779 tgctttcgaacatgagatggatcaacatcataaaaaacagg 35105819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 155 - 423
Target Start/End: Original strand, 583 - 852
Alignment:
Q  155 ataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaat 253  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||| | |||| || ||||| ||||    
T  583 ataaattacttacttatcacgtagatcccaaccagcgatactccccacttggtttagagcttccctccatcttgacaccttatgagggtcttgtttgaat 682  T
Q  254 ctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcgg 353  Q
    ||||||||||||||| ||||| | |    |||||| ||||||||||||   |||||||||||||| ||| |||| |||| ||||||||||  |||| | |    
T  683 ctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatcgacaccatagaaaataggaagaacatattttccag 782  T
Q  354 atccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttga 423  Q
    |||| | || |||||| ||||||||||||| |||||||| ||||||||||||  ||||||||||||||||    
T  783 atcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagtttcttga 852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 155 - 423
Target Start/End: Original strand, 9344 - 9613
Alignment:
Q  155 ataaatttcttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaat 253  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||| | |||| || ||||| ||||    
T  9344 ataaattacttacttatcacgtagatcccaaccagcgatactccccacttggtttagagcttccctccatcttgacaccttatgagggtcttgtttgaat 9443  T
Q  254 ctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcgg 353  Q
    ||||||||||||||| ||||| | |    |||||| ||||||||||||   |||||||||||||| ||| |||| |||| ||||||||||  |||| | |    
T  9444 ctttgttcatgtttggcaaaatcgtcccaataaatcccactttgcttttttacctcagaaggatcgacaccatagaaaataggaagaacatattttccag 9543  T
Q  354 atccttggacgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttga 423  Q
    |||| | || |||||| ||||||||||||| |||||||| ||||||||||||  ||||||||||||||||    
T  9544 atcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagtttcttga 9613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 164 - 443
Target Start/End: Complemental strand, 31496590 - 31496310
Alignment:
Q  164 ttacttatcacgtagatcccaaccagagata-ctcccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 262  Q
    |||||||||| |||||||||||||||||| | |  | |||||| |||||||||| |||||||||  |||||||||||||| |||||||||||||||||||    
T  31496590 ttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttca 31496491  T
Q  263 tgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggatccttgga 362  Q
    ||||||||||| |||| | |||||||||||||||||||||| |||  |||||| ||||||||||| |||||||| |||||| ||||||  ||| | | ||    
T  31496490 tgtttgacaaatgcttcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaaacaggcagaacatgttttttagataccttga 31496391  T
Q  363 cgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacct 443  Q
    | |||||    ||||| |||| ||||||||||||| | ||||||||||||||||| ||||| || ||| ||||| ||||||    
T  31496390 cccattcaaggatcttttctaattcttgcaagcacgaagttgagaaagcatagttccttgataagaccacaacaaaaacct 31496310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 164 - 436
Target Start/End: Complemental strand, 31501760 - 31501487
Alignment:
Q  164 ttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 262  Q
    |||||||||||||||||| |||||||| | ||   | |||||| | |||||||| |||||||||  |||||||||||||| |||||||||| ||||||||    
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  263 tgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttttcggatccttgga 362  Q
    ||||||||||| |||| |  |||||| |||||||||||||| ||| | | ||||||||||||||| |||||||| |||||| ||||||  ||| | ||||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaaacaggcagaacatgttttttagatacgtgga 31501561  T
Q  363 cgcattcccaaatcttctctatttcttgcaagcaccatgttgagaaagcatagtttcttgagaaaaccgcaaca 436  Q
    |||||||    ||||| |||| |||||||||||||||  ||||| |||||||||| |||||||  |||||||||    
T  31501560 cgcattcaaggatcttttctaattcttgcaagcaccaaattgaggaagcatagttccttgagaggaccgcaaca 31501487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 31020316 - 31020497
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 261  Q
    ||||||||||||| |||||||| ||||||||| |||| |||||| | |||||||| ||||| |||   ||||  |||||||  ||||||||| |||||||    
T  31020316 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttc 31020415  T
Q  262 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 343  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  |||||||||||||||||||||||||||||||||||||||    
T  31020416 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaaca 31020497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 163 - 343
Target Start/End: Complemental strand, 31489236 - 31489055
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 261  Q
    ||||||||||||| |||||||| || |||||| |||| |||||| | |||||||| |||||||||   ||||  |||||||  ||||||||| |||||||    
T  31489236 cttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctttgtaccacatgagagtcatgttggaatgtttgttc 31489137  T
Q  262 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 343  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  |||||||||||||||||||||||||||||||||||||||    
T  31489136 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaaca 31489055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 31030197 - 31030378
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatactccc-acttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 261  Q
    ||||||||||||| |||||||| ||||||||| |||| |||||| | |||||||| ||||| |||   ||||  ||||| |  ||||||||| |||||||    
T  31030197 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttc 31030296  T
Q  262 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 343  Q
    |||||||  ||| |||| | | ||||||||  |||| | ||  |||||||||||||||||||||||||||||||||||||||    
T  31030297 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaaca 31030378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 31162097 - 31162276
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatactcccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 262  Q
    ||||||||| ||| | |||||||||||||||   |  |||||| || ||||||| |||||||||  |||||||| ||||| |||||||||||||||||||    
T  31162097 cttacttatgacgcacatcccaaccagagattggcg-acttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttggaatctttgttca 31162195  T
Q  263 tgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 343  Q
    ||||||| ||| |||| | ||||| ||||  |||| | ||  | |||| |||||||||||||||| |||||||| ||||||    
T  31162196 tgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaaacaggcagaaca 31162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 343
Target Start/End: Complemental strand, 31476650 - 31476470
Alignment:
Q  164 ttacttatcacgtagatcccaaccagagata-ctcccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttca 262  Q
    ||||||||||||||||||||||||||||| | |  | |||||| | |||||| | ||||||| |  |||||| ||||||| ||||| |||||| ||| ||    
T  31476650 ttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatcgtagcaccatttgagagtcttgtttgaatctgtgtcca 31476551  T
Q  263 tgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 343  Q
    |||| |||||| |||| |  |||||| ||| |||||||||| |||  |||||||||||||||||| || ||||| ||||||    
T  31476550 tgttggacaaatgcttcactataaatcccagtttgctttcgcaccaaagaaggatcaacatcatagaacacaggtagaaca 31476470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 31529059 - 31529164
Alignment:
Q  244 ttgttggaatctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 343  Q
    ||||| ||||||||  ||||||| | |||| ||||| | |||| | |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||    
T  31529059 ttgtttgaatctttcctcatgttgggcaaatgcttttttataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaaca 31529158  T
Q  344 agtttt 349  Q
     |||||    
T  31529159 cgtttt 31529164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 31482393 - 31482317
Alignment:
Q  259 ttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacag 335  Q
    |||||||||| |||| |||||| ||||| | |||||||||||||| |||||||| ||||  |||||||| |||||||    
T  31482393 ttcatgtttggcaaaggctttagcataactcccactttgctttcgtacctcagatggattgacatcatagaaaacag 31482317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 349
Target Start/End: Original strand, 31150820 - 31151007
Alignment:
Q  163 cttacttatcacgtagatcccaaccagagatactc-ccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 261  Q
    ||||||||| ||||| |||||| ||||||| | |  |||||||| | || ||||| |||||||||  ||| || | | |||||||||||||||||| |||    
T  31150820 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 31150919  T
Q  262 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttt 349  Q
    ||||||  | || |||| | |||||  |||  |||| | ||| ||||| || |||||||||||||| || ||||| |||||| |||||    
T  31150920 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgtttt 31151007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 31159801 - 31159899
Alignment:
Q  245 tgttggaatctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 343  Q
    ||||||||||||| ||| |||||| |||  ||||   ||||| ||||| |||| | ||  ||||||||||||||||||||||| |||| ||| ||||||    
T  31159801 tgttggaatctttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaaca 31159899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 31244575 - 31244506
Alignment:
Q  275 gctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaa 344  Q
    ||||| ||||||  ||| ||||||||||| |||||||| ||||| |||||||| |||| ||| |||||||    
T  31244575 gctttttcataatctccgctttgctttcgcacctcagatggatccacatcatagaaaataggtagaacaa 31244506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 31159946 - 31159982
Alignment:
Q  390 gcaagcaccatgttgagaaagcatagtttcttgagaa 426  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  31159946 gcaagcaccatgttgaggaagcatagttttttgagaa 31159982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 473841 - 473912
Alignment:
Q  1 caaaaaataataataataaagcctaggattgcatatataaataaggtttacc--atctctttatattcaccc 70  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  473841 caaaaaataataataaaaaagcctaggattgtatatataaataaggtttaccatatctctttatattcaccc 473912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University