View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251_high_3 (Length: 451)
Name: NF5251_high_3
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 29288725 - 29288940
Alignment:
| Q |
6 |
gaagaaaataaagaaaagcttatccagtcttaaaggtaaatttaacattcatttaatttgttgatagtttcaaagacatggataatttgaaatataaaca |
105 |
Q |
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| T |
29288725 |
gaagaaaataaagaaaagcttatccagtcttaaaggtaaatttagcattcatttaatttgttgatagtttcaaagacat-gataatttgaaatataaaca |
29288823 |
T |
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| Q |
106 |
gccacatgataactagcctagtggtggtttgttttag-------tttgaatcatgtggttatttgtttggtaggtgttttataagtgctccgcttatata |
198 |
Q |
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| T |
29288824 |
gccacatgataactagcctagtggtggtttgttttagtttgaactttgaatcatgtggttatttgtttggtaggtgttttataagtgctccgcttatata |
29288923 |
T |
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| Q |
199 |
cagtgcatttgtatttt |
215 |
Q |
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| T |
29288924 |
cggtgcatttgtatttt |
29288940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 255 - 424
Target Start/End: Original strand, 29289016 - 29289186
Alignment:
| Q |
255 |
tcacatgaaattcggaataagattttatctttgtgaagtttttaagtaaactgtttttcaacatacacgtagatatctaaccattcatttcaatattggt |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29289016 |
tcacatgaaattcggaataagattttatctttgtgaaattttttagtaaactgtttttcaacatacacgtagatatctaaccattcatttcaatattggt |
29289115 |
T |
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| Q |
355 |
ttttcgcttacatgtttatgttctatatgattccatgtaaaagaacagagatgttaaa--tacaaattttgt |
424 |
Q |
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| T |
29289116 |
ttttcgcttacatgtttatgttctatatgattccat-taaaagaacagaaatgttaaaagtacaaattttgt |
29289186 |
T |
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