View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5251_high_5 (Length: 368)

Name: NF5251_high_5
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5251_high_5
NF5251_high_5
[»] chr5 (6 HSPs)
chr5 (15-362)||(2788549-2788895)
chr5 (273-325)||(418257-418309)
chr5 (272-319)||(11002692-11002739)
chr5 (273-332)||(28977129-28977188)
chr5 (288-328)||(1287876-1287916)
chr5 (288-328)||(2075761-2075801)
[»] chr4 (7 HSPs)
chr4 (286-328)||(25257864-25257906)
chr4 (282-328)||(37773731-37773777)
chr4 (289-328)||(31458983-31459022)
chr4 (287-328)||(1777301-1777342)
chr4 (287-328)||(48622827-48622868)
chr4 (288-328)||(12494705-12494745)
chr4 (288-328)||(50286926-50286966)
[»] chr8 (4 HSPs)
chr8 (288-336)||(7046281-7046329)
chr8 (252-319)||(41972026-41972093)
chr8 (273-325)||(25985479-25985531)
chr8 (288-328)||(36545102-36545142)
[»] chr7 (9 HSPs)
chr7 (253-328)||(19262682-19262758)
chr7 (279-343)||(5335862-5335926)
chr7 (288-332)||(12841562-12841606)
chr7 (288-328)||(13859295-13859335)
chr7 (288-328)||(34869375-34869415)
chr7 (273-328)||(38606960-38607016)
chr7 (253-332)||(40830177-40830256)
chr7 (288-328)||(44855459-44855499)
chr7 (288-328)||(49029231-49029271)
[»] chr2 (4 HSPs)
chr2 (273-328)||(937146-937201)
chr2 (273-328)||(11992378-11992433)
chr2 (288-328)||(8180735-8180775)
chr2 (288-328)||(38429839-38429879)
[»] chr1 (7 HSPs)
chr1 (273-328)||(8671875-8671930)
chr1 (288-343)||(40419579-40419634)
chr1 (273-328)||(51602013-51602068)
chr1 (288-328)||(9592689-9592729)
chr1 (288-328)||(30202417-30202457)
chr1 (288-328)||(34792636-34792676)
chr1 (288-328)||(51441052-51441092)
[»] chr3 (3 HSPs)
chr3 (290-328)||(2341003-2341041)
chr3 (288-328)||(52138755-52138795)
chr3 (288-328)||(54278975-54279015)
[»] scaffold0157 (1 HSPs)
scaffold0157 (288-328)||(25732-25772)
[»] chr6 (1 HSPs)
chr6 (288-328)||(9706731-9706771)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 2788895 - 2788549
Alignment:
Q  15 atcattatccactaaagcgacgttacaaatcaaatgatggtataatattctgttgtatataatatttctatcaaactccttaatcttaaaatatttctta 114  Q
    |||||||||| |||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2788895 atcattatccgctaaagcgacgttataaatcaaatgatgacataatgttctgttgtatataatatttctatcaaactccttaatcttaaaatatttctta 2788796  T
Q  115 atttatttttgatgtaatttttctagataatcccttgcttgtagcgattatactaccttccatctaatatatcattaaaccattattactgttaatctac 214  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2788795 att-atttttgatgtaatttttctagataatcccttgcttgtagcgattatactaccttccatctaatatatcattaaaccattattactattaatctac 2788697  T
Q  215 aagtcttctctttaccaagtcaaactaccttagcattttttccaccatcttttcatagtaggtactaccctaactctctctaatgttatcattcctaatt 314  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2788696 aagtcttctctttaccaaatcaaactaccttaacattttttccaccaccttttcatagtaggtactaccctaactctctctaatgttatcattcctaatt 2788597  T
Q  315 ctatcatgtctagttttatcatacattcatcataatattttcatctct 362  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  2788596 ctatcatgtctaattttatcatacattcatcataatattttcatctct 2788549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 418257 - 418309
Alignment:
Q  273 taggtactaccctaactctctctaatgttatcattcctaattctatcatgtct 325  Q
    ||||| |||||| |||||||||||||||| ||||| |||||||||||||||||    
T  418257 taggtgctaccccaactctctctaatgttgtcatttctaattctatcatgtct 418309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 11002692 - 11002739
Alignment:
Q  272 gtaggtactaccctaactctctctaatgttatcattcctaattctatc 319  Q
    |||||| |||||| |||||||||||||||| ||||| |||||||||||    
T  11002692 gtaggtgctacccgaactctctctaatgttgtcatttctaattctatc 11002739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 28977129 - 28977188
Alignment:
Q  273 taggtactaccctaactctctctaatgttatcattcctaattctatcatgtctagtttta 332  Q
    ||||| ||||||  ||||||||||||| | ||||||||||| ||||||| ||||||||||    
T  28977129 taggtgctacccccactctctctaatggtgtcattcctaatcctatcatttctagtttta 28977188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 1287876 - 1287916
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  1287876 ctctctctaatgatgtcattcctaatcctatcatgtctagt 1287916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 2075761 - 2075801
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  2075761 ctctctctaatgttgtcattcctaatcctatcttgtctagt 2075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 25257864 - 25257906
Alignment:
Q  286 aactctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  25257864 aactctctctaatgttgtcatttctaattctatcatgtctagt 25257906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 37773731 - 37773777
Alignment:
Q  282 ccctaactctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||    
T  37773731 cccttactctctctaatggtatcattcataattctatcatgtctagt 37773777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 31459022 - 31458983
Alignment:
Q  289 tctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  31459022 tctctctaatggtatcattcctaatcctatcatgtctagt 31458983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 1777301 - 1777342
Alignment:
Q  287 actctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    ||||||||||||| | ||||||||||| ||||||||||||||    
T  1777301 actctctctaatggtgtcattcctaatcctatcatgtctagt 1777342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 48622827 - 48622868
Alignment:
Q  287 actctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    ||||||||||||| | ||||||||||| ||||||||||||||    
T  48622827 actctctctaatggtgtcattcctaatcctatcatgtctagt 48622868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 12494745 - 12494705
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  12494745 ctctctctaatggtgtcattcctaatcctatcatgtctagt 12494705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 50286966 - 50286926
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  50286966 ctctctctaatggtgtcattcctaatcctatcatgtctagt 50286926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 7046329 - 7046281
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagttttatcat 336  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |||||||    
T  7046329 ctctctctaatgttgtcatttctaatcctatcatgtctagtcttatcat 7046281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 41972026 - 41972093
Alignment:
Q  252 ttttccaccatcttttcatagtaggtactaccctaactctctctaatgttatcattcctaattctatc 319  Q
    |||||||||||||||||    |||||  ||||||||||||||||||| || ||||| |||||||||||    
T  41972026 ttttccaccatcttttctacttaggtgttaccctaactctctctaatattctcatttctaattctatc 41972093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 25985531 - 25985479
Alignment:
Q  273 taggtactaccctaactctctctaatgttatcattcctaattctatcatgtct 325  Q
    ||||| |||||| |||||||||||||||| || || ||||||||||| |||||    
T  25985531 taggtgctaccccaactctctctaatgttgtcgtttctaattctatcctgtct 25985479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 36545142 - 36545102
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  36545142 ctctctctaatggtgtcattcctaatcctatcatgtctagt 36545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 19262682 - 19262758
Alignment:
Q  253 tttccaccatcttttc-atagtaggtactaccctaactctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||| ||||||||||| | | ||||| |||||| ||||||||||||| || ||||| |||| |||||||||||||||    
T  19262682 tttctaccatcttttctacaataggtgctaccccaactctctctaatattgtcatttctaactctatcatgtctagt 19262758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 5335926 - 5335862
Alignment:
Q  279 ctaccctaactctctctaatgttatcattcctaattctatcatgtctagttttatcatacattca 343  Q
    |||||| |||||||||||||||||||||| ||||||  ||  |||||||| ||| || |||||||    
T  5335926 ctaccccaactctctctaatgttatcatttctaattgcattctgtctagtcttaccacacattca 5335862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 12841562 - 12841606
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagtttta 332  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||    
T  12841562 ctctctctaatggggtcattcctaatcctatcatgtctagtttta 12841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 13859295 - 13859335
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  13859295 ctctctctaatggtgtcattcctaatcctatcatgtctagt 13859335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 34869415 - 34869375
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  34869415 ctctctctaatggtgtcattcctaatcctatcatgtctagt 34869375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 38607016 - 38606960
Alignment:
Q  273 taggtactaccctaactctctct-aatgttatcattcctaattctatcatgtctagt 328  Q
    ||||| ||||||  ||||||||| |||||| ||||||||||| ||||||||||||||    
T  38607016 taggtgctacccccactctctcttaatgttgtcattcctaatcctatcatgtctagt 38606960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 40830256 - 40830177
Alignment:
Q  253 tttccaccatcttttcat-agtaggtactaccctaactctctctaatgttatcattcctaattctatcatgtctagtttta 332  Q
    |||| ||||||||||| | | ||||| |||||| |||||| |||||| || ||||| |||||||||||||||||| |||||    
T  40830256 tttctaccatcttttcttcaataggtgctaccc-aactctttctaatattgtcatttctaattctatcatgtctactttta 40830177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 44855459 - 44855499
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  44855459 ctctctctaatggtgtcattcctaatcctatcatgtctagt 44855499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 49029271 - 49029231
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  49029271 ctctctctaatggtgtcattcctaatcctatcatgtctagt 49029231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 937201 - 937146
Alignment:
Q  273 taggtactaccctaactctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    ||||| |||||| ||||||||||| |||| ||||| ||||| ||||||||||||||    
T  937201 taggtcctaccccaactctctctattgttttcatttctaatcctatcatgtctagt 937146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 11992378 - 11992433
Alignment:
Q  273 taggtactaccctaactctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    ||||| ||||||| ||||||||||||| | |||||||||||  |||||||||||||    
T  11992378 taggtgctaccctcactctctctaatggtgtcattcctaatcttatcatgtctagt 11992433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 8180775 - 8180735
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  8180775 ctctctctaatggtgtcattcctaatcctatcatgtctagt 8180735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 38429879 - 38429839
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  38429879 ctctctctaatggtgtcattcctaatcctatcatgtctagt 38429839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 8671930 - 8671875
Alignment:
Q  273 taggtactaccctaactctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    ||||| ||||||  ||||||||||||| | ||||||||||| ||||||||||||||    
T  8671930 taggtgctacccccactctctctaatggtgtcattcctaatcctatcatgtctagt 8671875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 40419634 - 40419579
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagttttatcatacattca 343  Q
    |||||||||||||| ||||| |||||||||||   |||||||||| ||||||||||    
T  40419634 ctctctctaatgttgtcatttctaattctatctcatctagttttaccatacattca 40419579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 51602068 - 51602013
Alignment:
Q  273 taggtactaccctaactctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    ||||| ||||||| ||||||||||||| | |||||||||||  |||||||||||||    
T  51602068 taggtgctaccctcactctctctaatggtgtcattcctaatcatatcatgtctagt 51602013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 9592729 - 9592689
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  9592729 ctctctctaatggtgtcattcctaatcctatcatgtctagt 9592689  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 30202417 - 30202457
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  30202417 ctctctctaatggtgtcattcctaatcctatcatgtctagt 30202457  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 34792636 - 34792676
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  34792636 ctctctctaatggtttcattcctaatcctatcatgtctagt 34792676  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 51441052 - 51441092
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  51441052 ctctctctaatggtgtcattcctaatcctatcatgtctagt 51441092  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 2341003 - 2341041
Alignment:
Q  290 ctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  2341003 ctctctaatgttttcatttctaattctatcatgtctagt 2341041  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 52138795 - 52138755
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  52138795 ctctctctaatggtgtcattcctaatcctatcatgtctagt 52138755  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 54279015 - 54278975
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||||||||| ||||||||    
T  54279015 ctctctctaatggtgtcattcctaattctatcttgtctagt 54278975  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 25732 - 25772
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  25732 ctctctctaatggtgtcattcctaatcctatcatgtctagt 25772  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 9706771 - 9706731
Alignment:
Q  288 ctctctctaatgttatcattcctaattctatcatgtctagt 328  Q
    |||||||||||| | ||||||||||| ||||||||||||||    
T  9706771 ctctctctaatggtgtcattcctaatcctatcatgtctagt 9706731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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