View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251_low_10 (Length: 293)
Name: NF5251_low_10
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 29434945 - 29435213
Alignment:
| Q |
18 |
cacatatagcatggtgaaattcaggccaggattcattcactatgtgtttttcactcttaacgtctatggatgcctctcagtgatcgagagtatcatgatg |
117 |
Q |
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| T |
29434945 |
cacatataacatggtgaaattcaggccaggattcattcactatgtgtttttcactcttaacgtctatggatgcctctcagtgatcgagagtatcatgatg |
29435044 |
T |
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| Q |
118 |
gttgtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaactctacttgaaacctac |
217 |
Q |
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| T |
29435045 |
gttgtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaactctacttgaaacctac |
29435144 |
T |
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| Q |
218 |
cacatgatccacatgtgttaatttttcatatttcattggatgttcatgcagggaatcatgatgatgtcc |
286 |
Q |
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| T |
29435145 |
cacatgatccacacgtgttaatttttcatatttcattggttgttcatgcagggaatcatgatgatgtcc |
29435213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 29468168 - 29468426
Alignment:
| Q |
18 |
cacatatagcatggtgaaattcaggccaggattcattcactatgtgtttttcactcttaacgtctatggatgcctctcagtgatcgagagtatcatgatg |
117 |
Q |
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| T |
29468168 |
cacatataacatggtgaaattcagacccggattcattcactatgcgtttttcactattaacatctacggatgcatctcagtgattgagagtctcatgatg |
29468267 |
T |
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| Q |
118 |
gttgtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaactctacttgaaacctac |
217 |
Q |
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| T |
29468268 |
gttgtagctgcacttgttccaaattttctcatgggaatcattacaggagctggaatcattgtaagaacaaatgg---cgaaaattctacttgaaacctac |
29468364 |
T |
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| Q |
218 |
cacatgatccacatgtgttaatttttcatatttcattggatgttcatgcagggaatcatgatgatg |
283 |
Q |
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| T |
29468365 |
cacatgatccccatgtgttaatttgtcatat---att-gttattcatgcagggaatcatgatgatg |
29468426 |
T |
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