View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251_low_12 (Length: 278)
Name: NF5251_low_12
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 13647910 - 13648170
Alignment:
| Q |
18 |
gatagaacctgcatggagtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattg |
117 |
Q |
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| T |
13647910 |
gatagaacctgcatggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattg |
13648009 |
T |
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| Q |
118 |
agatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagg |
217 |
Q |
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| T |
13648010 |
agatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagg |
13648109 |
T |
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| Q |
218 |
gactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacat |
278 |
Q |
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| T |
13648110 |
gactcgtaaggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacat |
13648170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 13658438 - 13658697
Alignment:
| Q |
18 |
gatagaacctgcatggagtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattg |
117 |
Q |
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| T |
13658438 |
gatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaagggagaagaaatcattg |
13658537 |
T |
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| Q |
118 |
agatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagg |
217 |
Q |
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| T |
13658538 |
agatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattgaaggagcttgaggaagg |
13658637 |
T |
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| Q |
218 |
gactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcaca |
277 |
Q |
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| T |
13658638 |
gactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcaca |
13658697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 13652965 - 13653225
Alignment:
| Q |
18 |
gatagaacctgcatggagtggcttgactctcaacaattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattg |
117 |
Q |
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| T |
13652965 |
gatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttg |
13653064 |
T |
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| Q |
118 |
agatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagg |
217 |
Q |
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| T |
13653065 |
agttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataaaagaacttgaggaagg |
13653164 |
T |
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| Q |
218 |
gactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacat |
278 |
Q |
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| T |
13653165 |
gactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacat |
13653225 |
T |
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