View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5251_low_14 (Length: 259)

Name: NF5251_low_14
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5251_low_14
NF5251_low_14
[»] chr4 (6 HSPs)
chr4 (1-259)||(48965475-48965733)
chr4 (4-230)||(48958296-48958522)
chr4 (92-259)||(48912117-48912284)
chr4 (4-128)||(48961445-48961569)
chr4 (188-258)||(48962627-48962697)
chr4 (11-147)||(48974265-48974401)
[»] scaffold0536 (2 HSPs)
scaffold0536 (4-249)||(6293-6538)
scaffold0536 (53-249)||(10277-10471)
[»] chr6 (2 HSPs)
chr6 (11-258)||(12589942-12590189)
chr6 (13-258)||(12483237-12483482)
[»] chr2 (3 HSPs)
chr2 (13-159)||(13440358-13440504)
chr2 (1-159)||(13448509-13448667)
chr2 (14-81)||(13454993-13455060)
[»] chr5 (2 HSPs)
chr5 (1-159)||(28385480-28385638)
chr5 (1-81)||(12540831-12540911)
[»] chr7 (1 HSPs)
chr7 (1-159)||(3417402-3417560)
[»] chr8 (1 HSPs)
chr8 (17-159)||(12641353-12641495)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 48965475 - 48965733
Alignment:
Q  1 acccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965475 acccttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacc 48965574  T
Q  101 catataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965575 catataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactg 48965674  T
Q  201 agttatgtcgcttcgaattgagccaactcaaacactcttgcacgctcactgcactctct 259  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48965675 agttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctct 48965733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 48958296 - 48958522
Alignment:
Q  4 cttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccat 103  Q
    |||||||||||||||||||||||||||||  || || |||||||||   ||||||||||||||||| || |||||||| || ||    |||| |||||||    
T  48958296 cttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccctttcttctcaggaacaacccat 48958395  T
Q  104 ataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgat-aacgacagaggcttccaaagcttatgtacaacactgag 202  Q
    | ||| || ||||| |||||||||||  ||||||||||||||||||| ||||||| | ||| ||  ||| | ||||||||||| ||||||||||||||||    
T  48958396 acaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttat-cagataaataacatatgcttccaaagcatatgtacaacactgag 48958494  T
Q  203 ttatgtcgcttcgaattgagccaactca 230  Q
    ||||||| |||| | |||||||||||||    
T  48958495 ttatgtctcttcaagttgagccaactca 48958522  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 259
Target Start/End: Complemental strand, 48912284 - 48912117
Alignment:
Q  92 ggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgt 191  Q
    |||| ||||||||| || || |||| ||||||||| ||  | ||||||||||||||||| |||||||||  | || ||||  |||||||||||| |||||    
T  48912284 ggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgt 48912185  T
Q  192 acaacactgagttatgtcgcttcgaattgagccaactcaaacactcttgcacgctcactgcactctct 259  Q
    ||| ||| ||||||| | | ||||| || ||||||||||||||||| ||||| |||||  ||||||||    
T  48912184 acaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctct 48912117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 48961445 - 48961569
Alignment:
Q  4 cttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccat 103  Q
    ||||||| |||||||||||||||| ||||  || || |||||||| |  ||||||||||| ||||||||| ||||||| || ||    |||| |||||||    
T  48961445 cttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttcccttttttctcaggaacaacccat 48961544  T
Q  104 ataaaatcatgacccgatgcttcta 128  Q
    | ||| || ||||||||||||||||    
T  48961545 acaaattcgtgacccgatgcttcta 48961569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 48962627 - 48962697
Alignment:
Q  188 atgtacaacactgagttatgtcgcttcgaattgagccaactcaaacactcttgcacgctcactgcactctc 258  Q
    |||||||||||||||||||||||||| ||||| ||||| | || ||||||||| |||| |||  |||||||    
T  48962627 atgtacaacactgagttatgtcgctttgaattaagccaccacagacactcttgtacgcccacaacactctc 48962697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 48974265 - 48974401
Alignment:
Q  11 ccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaat 110  Q
    ||||| || |||||||| |||| |||||| | ||||||||  ||||| || |  ||||||||||||||||| || ||   ||| | ||||||||| || |    
T  48974265 ccaatattcctctcttcaaatccctttggcatccacttttcgttctcgtcattgctctcatcctctttccctttcttctcggggacaacccatatgaatt 48974364  T
Q  111 catgacccgatgcttctattgcacacgcaatctcata 147  Q
      |||||||||||||||||||| |  |||||||||||    
T  48974365 ggtgacccgatgcttctattgcgcttgcaatctcata 48974401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 6538 - 6293
Alignment:
Q  4 cttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccat 103  Q
    ||||||||| || |||||||||||||||| |||||| ||||| |||   |||||||||||||||||||| |||||||| || ||    |||| |||||||    
T  6538 cttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcatcttctttccctttcttctcaggaacaacccat 6439  T
Q  104 ataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactgagt 203  Q
    || || |  |||||||||||||||||  |||| |||||||| ||||| ||||||||| |  || | || | ||||||||||| |||||||||||||||||    
T  6438 atgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtacaacactgagt 6339  T
Q  204 tatgtcgcttcgaattgagccaactcaaacactcttgcacgctcac 249  Q
    ||| | ||||||| |  |||||||||| |||||| ||||| |||||    
T  6338 tatctggcttcgagtctagccaactcagacactcatgcacactcac 6293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 249
Target Start/End: Complemental strand, 10471 - 10277
Alignment:
Q  53 ttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagct 152  Q
    |||||||||| |||||||| ||||||||| || ||    |||| ||| |||| ||| || | ||||||||||||||     ||||||||||||||||| |    
T  10471 ttctcctcttgactctcattctctttccctttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagtt 10372  T
Q  153 gtttatcctgataacgacagaggcttccaaagcttatgtacaacactgagttatgtcgcttcgaattgagccaactcaaacactcttgcacgctcac 249  Q
    |||||||   | ||  ||| |||||||||||||  ||||||||||||||  ||| ||||||| | || |||||||||| |||||| ||||| |||||    
T  10371 gtttatctgaaaaataacataggcttccaaagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcac 10277  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 12590189 - 12589942
Alignment:
Q  11 ccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaat 110  Q
    ||||||||||||||||| ||||   | || ||||| ||||| || ||||| ||||||||||| || ||||| || ||   ||||||||||||||  || |    
T  12590189 ccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactctcatcttccttcccttttttctcgggaataacccatacgaatt 12590090  T
Q  111 catgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacga-cagaggcttccaaagcttatgtacaacactgagttatgtc 209  Q
    | || || |||||||||||  |||||| |||||||||||| |||||||| ||| ||  | || | ||| ||||||| |||||||||||| ||||||| ||    
T  12590089 cgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatc-tgagaaatagcatatgctcccaaagcatatgtacaacacagagttatctc 12589991  T
Q  210 gcttcgaattgagccaactcaaacactcttgcacgctcactgcactctc 258  Q
    ||||||| || |||||||||| ||||||||||||| ||||  |||||||    
T  12589990 gcttcgagtttagccaactcagacactcttgcacgttcacaacactctc 12589942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 12483482 - 12483237
Alignment:
Q  13 aatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaatca 112  Q
    |||||||||||| || |||| ||| || ||||||||||  |||||||| || |||||||| || ||||| || ||    |||| ||||||||| || |      
T  12483482 aatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaatttt 12483383  T
Q  113 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactgagttatgtcgct 212  Q
    | |||||||||||||||| | || | ||| || ||||||||||||||     ||   || ||||| ||||||| ||||||||||||||| || | | |||    
T  12483382 ttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgct 12483283  T
Q  213 tcgaattgagccaactcaaacactcttgcacgctcactgcactctc 258  Q
    | || || ||||||||   |||||| |||||||||||  |||||||    
T  12483282 ttgagtttagccaactttgacactcatgcacgctcacaacactctc 12483237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 13440358 - 13440504
Alignment:
Q  13 aatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaatca 112  Q
    |||||||||||||||||||| |||||| ||||||||||  ||||| || ||||||||||| |||||||| || ||    |||| ||||||||| ||        
T  13440358 aatgtttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatggg 13440457  T
Q  113 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 159  Q
    ||||  |||||||||||||| ||||| |||||||| || ||||||||    
T  13440458 tgactagatgcttctattgcgcacgccatctcatatagttgtttatc 13440504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 13448509 - 13448667
Alignment:
Q  1 acccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacc 100  Q
    ||||||||| || || ||||||||||| |||| ||| |||||||||||||  ||||| ||||| |||||||| |||||||| || ||    |||| ||||    
T  13448509 acccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttctcaggaacaacc 13448608  T
Q  101 catataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 159  Q
    ||||| ||    ||||| ||||||||||| ||||| || ||||| || || ||||||||    
T  13448609 catatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatc 13448667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 13454993 - 13455060
Alignment:
Q  14 atgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 81  Q
    |||||| ||||||| |||| ||| || ||||||||||| ||||||||||| |||||||| ||||||||    
T  13454993 atgtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccc 13455060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 28385480 - 28385638
Alignment:
Q  1 acccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacc 100  Q
    |||||||||||||||||||||||| || |||| |||||| | ||||||||  ||||| |||||  ||||||| |||||||| || ||    |||| ||||    
T  28385480 acccttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacc 28385579  T
Q  101 catataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 159  Q
    ||||| ||    ||||| |||||||||| ||| || ||||||||||| || ||||||||    
T  28385580 catatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatc 28385638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12540831 - 12540911
Alignment:
Q  1 acccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 81  Q
    |||||| ||||||||||||||||| || |||| ||| || | ||||||||  ||||| |||||| ||||||| ||||||||    
T  12540831 acccttttttccaatgtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccc 12540911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 3417560 - 3417402
Alignment:
Q  1 acccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacc 100  Q
    |||||||||||||||||||||||| || |||| ||| || ||||||||||  ||||| |||||  ||||||| ||||| || || ||     ||| ||||    
T  3417560 acccttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacc 3417461  T
Q  101 catataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 159  Q
    ||||| ||    ||||||||||||||||||||  | ||||||||||| || ||||||||    
T  3417460 catatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatc 3417402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 12641495 - 12641353
Alignment:
Q  17 tttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaatcatgac 116  Q
    ||||||||||||||||  || || ||||||||||  |||||||||||||||||||| | |||||| || ||    |||| |||||||| ||| || ||||    
T  12641495 tttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgac 12641396  T
Q  117 ccgatgcttctattgcacacgcaatctcataaagctgtttatc 159  Q
    | ||   ||||||| | | ||||||||| ||||| ||||||||    
T  12641395 ctgaattttctattccgctcgcaatctcgtaaagttgtttatc 12641353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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