View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5251_low_17 (Length: 244)

Name: NF5251_low_17
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5251_low_17
NF5251_low_17
[»] chr7 (8 HSPs)
chr7 (1-236)||(42457028-42457268)
chr7 (1-71)||(27231882-27231952)
chr7 (1-71)||(1366643-1366713)
chr7 (1-71)||(4826791-4826861)
chr7 (1-64)||(49069080-49069143)
chr7 (1-71)||(32811426-32811496)
chr7 (1-65)||(28020049-28020113)
chr7 (1-71)||(31227522-31227592)
[»] chr6 (3 HSPs)
chr6 (1-71)||(8646727-8646797)
chr6 (1-71)||(1837008-1837078)
chr6 (1-71)||(2810108-2810178)
[»] chr2 (18 HSPs)
chr2 (1-70)||(15384457-15384526)
chr2 (1-71)||(45034427-45034497)
chr2 (1-70)||(45571060-45571129)
chr2 (1-70)||(45574727-45574796)
chr2 (1-70)||(45578394-45578463)
chr2 (1-70)||(45582061-45582130)
chr2 (1-70)||(45585728-45585797)
chr2 (1-70)||(45589395-45589464)
chr2 (1-70)||(45593062-45593131)
chr2 (1-70)||(45596729-45596798)
chr2 (1-70)||(45600396-45600465)
chr2 (1-70)||(45604063-45604132)
chr2 (1-70)||(45607730-45607799)
chr2 (1-70)||(45611397-45611466)
chr2 (1-70)||(45615064-45615133)
chr2 (1-65)||(4044623-4044687)
chr2 (1-71)||(4063301-4063371)
chr2 (1-71)||(3838466-3838536)
[»] chr8 (10 HSPs)
chr8 (1-71)||(12958805-12958875)
chr8 (1-71)||(24178001-24178071)
chr8 (1-71)||(22429564-22429634)
chr8 (1-71)||(42786393-42786463)
chr8 (1-71)||(44796371-44796441)
chr8 (1-70)||(6899450-6899519)
chr8 (3-71)||(36366075-36366143)
chr8 (1-71)||(35011241-35011311)
chr8 (3-70)||(24915220-24915287)
chr8 (1-71)||(32575200-32575274)
[»] chr5 (6 HSPs)
chr5 (1-71)||(1015204-1015274)
chr5 (1-71)||(29031085-29031155)
chr5 (1-70)||(26327566-26327635)
chr5 (1-71)||(22731307-22731377)
chr5 (1-71)||(15968340-15968410)
chr5 (3-70)||(27488377-27488444)
[»] chr4 (9 HSPs)
chr4 (1-71)||(43020785-43020855)
chr4 (3-71)||(42804285-42804353)
chr4 (1-71)||(20459289-20459359)
chr4 (1-71)||(47866065-47866135)
chr4 (1-71)||(20745380-20745450)
chr4 (3-71)||(20956919-20956987)
chr4 (1-71)||(3043821-3043891)
chr4 (1-71)||(27841860-27841930)
chr4 (8-65)||(55190722-55190779)
[»] chr3 (5 HSPs)
chr3 (4-70)||(5177817-5177883)
chr3 (1-71)||(29457888-29457958)
chr3 (1-71)||(33371890-33371960)
chr3 (1-71)||(54087446-54087516)
chr3 (8-70)||(49885409-49885471)
[»] chr1 (4 HSPs)
chr1 (3-71)||(43929396-43929464)
chr1 (1-71)||(34662711-34662781)
chr1 (1-70)||(47678304-47678373)
chr1 (1-70)||(47844564-47844633)
[»] scaffold0242 (1 HSPs)
scaffold0242 (1-71)||(16536-16606)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 42457028 - 42457268
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaacnnnnnnnn----ataaatagaatcggaga 96  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||             ||||||| ||||||||     
T  42457028 tgaatagttgatgtatttggtctatttctaagctaggtacatcaattattgaataaatctaaaaagttaatttttttttttttataaataaaatcggagg 42457127  T
Q  97 gagtacaagggtacactaattaaaatgttgatatttaacttttctagtcgcattaaatattgaaattgaaatatagatg-aacctttgacactttgattt 195  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  42457128 gagtacaagggtaaactaattaagatgttgatattcaacttttctagtcgcattaaatattgaaattgaaatatagatgcaagctttgacactttgattt 42457227  T
Q  196 aaatttattttaatatcgatcaagtttgatttttgatgatg 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42457228 aaatttattttaatatcgatcaagtttgatttttgatgatg 42457268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27231882 - 27231952
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||||||||    
T  27231882 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaac 27231952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1366643 - 1366713
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| ||||||| |  ||||||||||||||||| ||| ||||||||||||||||    
T  1366643 tgaatagttgatgtatttggtctatttctgaactaggtacatcaattattgaatgaatctaaaaagttaac 1366713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4826861 - 4826791
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | || |||||||||||||| ||| ||||||||||||||||    
T  4826861 tgaatagttgatgtatttggtctatttctaggctaagtacatcaattattgaatgaatctaaaaagttaac 4826791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 49069143 - 49069080
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaa 64  Q
    ||||||||||||||||||||| |||||||| | |||||| |||||||||| ||| |||||||||    
T  49069143 tgaatagttgatgtatttggtctatttctatggtaggtatatcaattattgaatgaatctaaaa 49069080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 32811426 - 32811496
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    |||||| |||||||||||||| |||||||| | ||||||||||||||| | ||| |||||||||| |||||    
T  32811426 tgaataattgatgtatttggtctatttctaggctaggtacatcaattactgaatgaatctaaaaaattaac 32811496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28020049 - 28020113
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaa 65  Q
    ||||||||||||||||||||| |||||||| || || |||| |||||||| ||| ||||||||||    
T  28020049 tgaatagttgatgtatttggtctatttctaggtcagatacaacaattatttaatgaatctaaaaa 28020113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31227592 - 31227522
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||  |||||||| |||| ||| |||||||||| |||||    
T  31227592 tgaatagttgatgtatttggtctatttctaggctaaatacatcaactattgaatgaatctaaaaaattaac 31227522  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 8646727 - 8646797
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8646727 tgaatagttgatgcatttggtctatttctaagttaggtacatcaattattaaataaatctaaaaagataac 8646797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1837008 - 1837078
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    |||||| |||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||| |||||    
T  1837008 tgaataattgatgtatttggtctatttctaggctaggtacatcaattattgaataaatctaaaaaattaac 1837078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2810178 - 2810108
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||  ||||||||   ||||||||||||||||| ||| |||||||||| |||||    
T  2810178 tgaatagttgatgtatttggactatttctagactaggtacatcaattattgaatgaatctaaaaaattaac 2810108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15384526 - 15384457
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||    
T  15384526 tgaatagttgatgtatttggtctatttccaagctaggtacatcaattattaaataaatctaaaaagttaa 15384457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 45034497 - 45034427
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  45034497 tgaatagttgatgtatttggtctatttctaggttaggtacatcaattattgaatgaatctaaaaagttaac 45034427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45571129 - 45571060
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45571129 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45571060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45574796 - 45574727
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45574796 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45574727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45578463 - 45578394
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45578463 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45578394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45582130 - 45582061
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45582130 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45582061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45585797 - 45585728
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45585797 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45589464 - 45589395
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45589464 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45589395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45593131 - 45593062
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45593131 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45593062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45596798 - 45596729
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45596798 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45596729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45600465 - 45600396
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45600465 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45600396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45604132 - 45604063
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45604132 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45604063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45607799 - 45607730
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45607799 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45607730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45611466 - 45611397
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45611466 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45611397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45615133 - 45615064
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  45615133 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaa 45615064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4044623 - 4044687
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaa 65  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||    
T  4044623 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaa 4044687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4063371 - 4063301
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    |||||||||||||||||| || ||||||||   ||||||||||||||||| ||| |||||||||| |||||    
T  4063371 tgaatagttgatgtattttgtctatttctagagtaggtacatcaattattgaatgaatctaaaaaattaac 4063301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3838466 - 3838536
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| ||||||||    | |||||||||| ||| ||| ||||||||||||||||    
T  3838466 tgaatagttgatgtatttggtctatttctagacgaagtacatcaatcattgaatgaatctaaaaagttaac 3838536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12958875 - 12958805
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  12958875 tgaatagttgatgtatttggtctatttctaagctaggtacatcaattattgaatgaatctaaaaagttaac 12958805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 24178071 - 24178001
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| ||||||||||||||||    
T  24178071 tgaatagttgatgtatttggtctatttctaagctaggtacatcaaatattgaatgaatctaaaaagttaac 24178001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22429634 - 22429564
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||| ||||||| |||||||||||||| |||||    
T  22429634 tgaatagttgatgtatttggtctatttctaggctaggtacattaattattgaataaatctaaaaaattaac 22429564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42786463 - 42786393
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||| ||||||||||| |||||||||| || |||||||||||||| ||| ||||||||||||||||    
T  42786463 tgaatagttaatgtatttggtctatttctaagctaagtacatcaattattgaatgaatctaaaaagttaac 42786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44796441 - 44796371
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | || |||||||||||||| ||| ||||||||||||||||    
T  44796441 tgaatagttgatgtatttggtctatttctaggctatgtacatcaattattgaatgaatctaaaaagttaac 44796371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6899519 - 6899450
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  6899519 tgaatagttgatgtatttgatctatttctaggttaggtacatcaattattgaatgaatctcaaaagttaa 6899450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 36366075 - 36366143
Alignment:
Q  3 aatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||| |||||    
T  36366075 aatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaaattaac 36366143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35011311 - 35011241
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||| ||||||| ||| |||||||||| |||||    
T  35011311 tgaatagttgatgtatttggtctatttctaggctaggtacattaattattgaatgaatctaaaaaattaac 35011241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 24915220 - 24915287
Alignment:
Q  3 aatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    |||| ||||||||||| || |||||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  24915220 aataattgatgtattttgtctatttctaagctagatacatcaattatttaatgaatctaaaaagttaa 24915287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32575274 - 32575200
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacat----caattattaaataaatctaaaaagttaac 71  Q
    |||||| |||||||||||||| ||||| || | |||||||||    |||||||| ||| ||||||||||||||||    
T  32575274 tgaataattgatgtatttggtctatttttaggctaggtacatcaatcaattattgaatgaatctaaaaagttaac 32575200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1015204 - 1015274
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  1015204 tgaatagttgatgtatttggtctatttctaagttaggtacatcgattattgaatgaatctaaaaagttaac 1015274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29031085 - 29031155
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||| || ||| ||||||||||||||||    
T  29031085 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattgttgaatgaatctaaaaagttaac 29031155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26327635 - 26327566
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||||| ||||| ||  |||||||||||||||||| ||| |||||||||||||||    
T  26327635 tgaatagttgatgtatttggtctatttttagattaggtacatcaattattgaatgaatctaaaaagttaa 26327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22731307 - 22731377
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||| ||||||| ||| |||||||||| |||||    
T  22731307 tgaatagttgatgtatttggtctatttctaggctaggtacattaattatttaatgaatctaaaaaattaac 22731377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 15968410 - 15968340
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||| ||||| ||||||| ||| |||||||||| |||||    
T  15968410 tgaatagttgatgtatttggtctatttctaggctagatacattaattattgaatgaatctaaaaaattaac 15968340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 27488444 - 27488377
Alignment:
Q  3 aatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    |||||||||| |||||||| |||||||| | ||| ||||||||||||| ||| |||||||||| ||||    
T  27488444 aatagttgatatatttggtctatttctaggctagatacatcaattattgaatgaatctaaaaaattaa 27488377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43020855 - 43020785
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  43020855 tgaatagttgatgtatttggtctatttctaggttaggtacatcaattattgaatgaatctaaaaagttaac 43020785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 42804353 - 42804285
Alignment:
Q  3 aatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  42804353 aatagttgatgtatttggtctatttctaaattaggtacatcaattattgaatgaatctaaaaagttaac 42804285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20459289 - 20459359
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||||||||    
T  20459289 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaac 20459359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47866135 - 47866065
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||||||||    
T  47866135 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaac 47866065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20745380 - 20745450
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||| | |||||||| | ||||||||||||||||| ||| |||||||||| |||||    
T  20745380 tgaatagttgatgtatttgatctatttctaggctaggtacatcaattattgaatgaatctaaaaaattaac 20745450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 20956987 - 20956919
Alignment:
Q  3 aatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||| |||||||| | ||| ||||||||||||| ||| |||||||||| |||||    
T  20956987 aatagttgatgtatttggtctatttctaggctagctacatcaattattgaatgaatctaaaaaattaac 20956919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3043891 - 3043821
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| ||||| ||   ||||||||||||||||| ||| |||||||||| |||||    
T  3043891 tgaatagttgatgtatttggtctatttttagactaggtacatcaattattgaatgaatctaaaaaattaac 3043821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27841930 - 27841860
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||| | |||||||| | ||||||||| ||||||| ||| |||||||||| |||||    
T  27841930 tgaatagttgatgtatttgatctatttctaggctaggtacattaattattgaatgaatctaaaaaattaac 27841860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 55190722 - 55190779
Alignment:
Q  8 ttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaa 65  Q
    |||||||||||||| |||||||| | ||| ||||||||||||| ||| ||| ||||||    
T  55190722 ttgatgtatttggtctatttctaggctagatacatcaattattgaatgaatataaaaa 55190779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 5177817 - 5177883
Alignment:
Q  4 atagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  5177817 atagttgatgtatttggtctatttctaagttaggtacatcaattattgaatgaatctaaaaagttaa 5177883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29457888 - 29457958
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| ||||||||   ||||||||||||| ||| ||| ||||||||||||||||    
T  29457888 tgaatagttgatgtatttggtctatttctagactaggtacatcaatcattgaatgaatctaaaaagttaac 29457958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 33371960 - 33371890
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||||||| ||||||| |||||| |||||    
T  33371960 tgaatagttgatgtatttggtctatttttaggctaggtacatcaattattgaataaatttaaaaaattaac 33371890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 54087446 - 54087516
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    |||||||||||||||||| || |||||||| ||||||||||| ||||||| ||| ||| ||||| ||||||    
T  54087446 tgaatagttgatgtattttgtctatttctacgttaggtacattaattattgaatgaatttaaaatgttaac 54087516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 49885471 - 49885409
Alignment:
Q  8 ttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    |||||||||||||| ||||||||   ||| ||||||||||||| ||| |||||||||| ||||    
T  49885471 ttgatgtatttggtctatttctagactagatacatcaattattgaatgaatctaaaaaattaa 49885409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 43929396 - 43929464
Alignment:
Q  3 aatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43929396 aatagttgatgtatttggtctatttctaagctaggtacatcaattattgaatgaatctaaaaagttaac 43929464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34662781 - 34662711
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||||||||    
T  34662781 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaac 34662711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47678304 - 47678373
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  47678304 tgaatagttgatgtatttgatctatttctaggttaggtacatcaattattgaatgaatctcaaaagttaa 47678373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47844633 - 47844564
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaa 70  Q
    |||||||||||| |||||| | |||||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  47844633 tgaatagttgatatatttgatctatttctaggttaggtacatcaattattgaatgaatctcaaaagttaa 47844564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16606 - 16536
Alignment:
Q  1 tgaatagttgatgtatttggtatatttctaagttaggtacatcaattattaaataaatctaaaaagttaac 71  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |||||||||| |||||    
T  16606 tgaatagttgatgtatttggtctatttctaggctaggtacatcaattattgaatgaatctaaaaaattaac 16536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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