View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5251_low_18 (Length: 240)

Name: NF5251_low_18
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5251_low_18
NF5251_low_18
[»] chr4 (5 HSPs)
chr4 (18-240)||(48965720-48965942)
chr4 (24-177)||(48962691-48962844)
chr4 (24-185)||(48911963-48912124)
chr4 (34-186)||(48958554-48958706)
chr4 (31-189)||(48974513-48974671)
[»] chr6 (2 HSPs)
chr6 (15-186)||(12589786-12589957)
chr6 (24-106)||(12483161-12483243)
[»] chr2 (2 HSPs)
chr2 (34-187)||(13440607-13440760)
chr2 (17-109)||(13448753-13448845)
[»] scaffold0536 (2 HSPs)
scaffold0536 (31-185)||(6129-6283)
scaffold0536 (24-108)||(10190-10274)
[»] chr5 (2 HSPs)
chr5 (34-109)||(28385741-28385816)
chr5 (34-109)||(12541092-12541167)
[»] chr8 (1 HSPs)
chr8 (46-120)||(12641164-12641238)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 48965720 - 48965942
Alignment:
Q  18 tcactgcactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  48965720 tcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctactcac 48965819  T
Q  118 ataatacttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagctctttctccagcattgatcccataaattct 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965820 ataatatttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagctctttctccagcattgatcccataaattct 48965919  T
Q  218 tctgatgactttggctgtcttcc 240  Q
    ||||||||||||||| |||||||    
T  48965920 tctgatgactttggcagtcttcc 48965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 48962691 - 48962844
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataata 123  Q
    ||||||| |||||||| ||||||||||||||||| |  || |||||||||||| ||||||| |||||||||||||| ||||||||| | ||||| || |     
T  48962691 cactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtg 48962790  T
Q  124 cttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccatt 177  Q
     |  ||| ||||||| |||||||| |||||||| ||||||||||||||||||||    
T  48962791 ttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatgagtccatt 48962844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 48912124 - 48911963
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataata 123  Q
    ||||||||| ||| ||||| || |||||||||| |||  | |||||||||||||||||||||||||||||||| || ||||  ||  | ||||| || |     
T  48912124 cactctcttctcctctctcagccttctcttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtg 48912025  T
Q  124 cttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga 185  Q
     |  || |||||||| |||||||| ||||| ||||||||||||| || ||| ||||||||||    
T  48912024 ttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttga 48911963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 48958554 - 48958706
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatgtac 133  Q
    ||||||||||| |||||||||||  || |  |||||||||||||| ||||||||||||||| |||| ||||||||| | ||||  || |  |  ||| ||    
T  48958554 tcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcac 48958653  T
Q  134 tcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgag 186  Q
    ||||| || ||||| |||  ||| |||||||  |||||||| |||||||||||    
T  48958654 tcttcaccatcaagttcaatgaagttgttgatgatgagtcccttacttttgag 48958706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 48974513 - 48974671
Alignment:
Q  31 ttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatg 130  Q
    ||||||||| |||||||||||||||   ||| ||| ||| ||||||| ||| || | |||||||||   ||||||  |  | |||||||||| ||  |||    
T  48974513 ttgtcccctatctgctttctcttgagtggtcctacaaatgagagaagatggtcccaaatgccaagctcgatgacctattgttttctcataatgctcgatg 48974612  T
Q  131 tactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagctc 189  Q
    |||||||| || |||||||||| ||| |||||||| ||||| ||||  |||||||||||    
T  48974613 tactcttctccatcaagctcagtgaagttgttgacgatgagcccatagcttttgagctc 48974671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 12589957 - 12589786
Alignment:
Q  15 cgttcactgcactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctatt 114  Q
    |||||||  ||||||| | |||||| |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||| ||||| ||| | ||    
T  12589957 cgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtggtttt 12589858  T
Q  115 ctcataatacttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgag 186  Q
    |||||| |  || |   ||||||  || ||||| |||||||| ||||| |||||||||||||||||||||||    
T  12589857 ctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagtccattacttttgag 12589786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 12483243 - 12483161
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgaccc 106  Q
    ||||||| | |||||||||||| || ||||||||||| | || |||||| |||  |||||| | |||||||||||| ||||||    
T  12483243 cactctcgtttcccctctctgccttttcttgaacagtttcacaaataagtgaatgtggacctaaatgccaagccttgtgaccc 12483161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 13440607 - 13440760
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatgtac 133  Q
    |||||||||||||||||||||||  || |||||||||||||||| |||||| ||||||||| |||| ||||||||| | |||||||| |  |  ||| ||    
T  13440607 tcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcac 13440706  T
Q  134 tcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagc 187  Q
    ||||| |||||||| |||| ||| |||||||  |||||| | ||||||||||||    
T  13440707 tcttctccgtcaagttcagtgaagttgttgatgatgagtgctttacttttgagc 13440760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 13448753 - 13448845
Alignment:
Q  17 ttcactgcactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtg 109  Q
    ||||| |||| ||| | ||||||||||| |||||||||| |||| || ||||||||||||| |||||||||||||||| |||| |||||||||    
T  13448753 ttcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtg 13448845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 6283 - 6129
Alignment:
Q  31 ttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatg 130  Q
    ||||||||||| |||||| |||||||||||  |||||||||||||||| ||||||||||||||||| || ||||| ||  | ||||| || |  |  |||    
T  6283 ttgtcccctctgtgctttttcttgaacagttctacgaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatg 6184  T
Q  131 tactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga 185  Q
    |||||||| |||||||| ||||  |||||||| ||||||| ||| || |||||||    
T  6183 tactcttcaccgtcaagttcagaaaaattgttaacaatgattccgttgcttttga 6129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 10274 - 10190
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgt 108  Q
    |||||| || ||| ||||||| |||||||||||||||  |||||| |||| ||||||||| |||||||||||| || ||||||||    
T  10274 cactctgttctcctctctctgttttctcttgaacagttctacgaacaagataagctggactaagatgccaagctttctgacccgt 10190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 28385741 - 28385816
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtg 109  Q
    |||| |||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  28385741 tcccttctctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtg 28385816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 12541092 - 12541167
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtg 109  Q
    ||||||| |||||||||||||||   | ||  |||||| ||||| ||||||||||||||||||||| |||||||||    
T  12541092 tcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtg 12541167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 12641238 - 12641164
Alignment:
Q  46 tttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcata 120  Q
    |||||||| || ||| || ||||||||| ||| ||||||||||||||||||||| | |||| || | ||||||||    
T  12641238 tttctcttcaaaagttttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcata 12641164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University