View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251_low_4 (Length: 397)
Name: NF5251_low_4
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_low_4 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 18912805 - 18912435
Alignment:
| Q |
18 |
gtatgtttgtgatcagaggtttggaatgagtaccaactattttcttacagaataaattgtgttaaccaacaaggtttaggtctagtggaagaggctagac |
117 |
Q |
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| T |
18912805 |
gtatgtttgtgatcagaggtttggaatgagtaccaactattttcttacagaataaattgtgttaaccaacaaggtttaggtttagtgaaagaggctagac |
18912706 |
T |
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| Q |
118 |
taaccaaggttcgatctcagttcggaaaggtattcacattttagtgtctgacgcagctcgaatagcattacctccagtagagt-gaacctatctgaaact |
216 |
Q |
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| T |
18912705 |
taaccaaggttcgatctcagttcggaaaggtattcacattttagtgtctgacgcacctcgaatagcattacctccagtagagtggaacctatctgaaact |
18912606 |
T |
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| Q |
217 |
-nnnnnnnncgagtcatcctattaccatgttttgtaagcataaaaaagcttttgcaaataattgtatatatttgatattattctttgttaatctttgatt |
315 |
Q |
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| T |
18912605 |
aaaaaaaaacgagttatcctattaccatgttttgtaagcatgaaaaagcttttgcaaataattgtatatatttgatattattctttgtttatctttgatt |
18912506 |
T |
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| Q |
316 |
accacttcaaatatttccaaactagttttgaaagcgatgcttatttaatttttgtactttgtattgtagta |
386 |
Q |
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| T |
18912505 |
accacttcaaatatttccaaactagttttgaaagcaatgcttatttaatttttgtactttctattgtagta |
18912435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 18920008 - 18919804
Alignment:
| Q |
26 |
gtgatcagaggtttggaatgagtaccaactattttcttacagaataaattgtgttaaccaacaaggtttaggtctagtggaagaggctagact------- |
118 |
Q |
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| T |
18920008 |
gtgaacagaggtttggaatgcatatcaactattttctaatataatgaattgagttaaccaacaaggtttgggtctagcagaagaggctagactcacgcaa |
18919909 |
T |
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| Q |
119 |
-------aaccaaggttc-gatctcagttcggaaaggtattcacattttagtgtctgacgcagctcgaatagcattacctccagtagagtgaacctatct |
210 |
Q |
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| T |
18919908 |
cgtggagaaccaaggttcaaatcttagctgggaaaggtatccacattttagtgtctgacacacctcaaatatgattacctccagtagagggaacctatcg |
18919809 |
T |
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| Q |
211 |
gaaac |
215 |
Q |
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| T |
18919808 |
gaaac |
18919804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 14750282 - 14750345
Alignment:
| Q |
31 |
cagaggtttggaatgagtaccaactattttcttacagaataaattgtgttaaccaacaaggttt |
94 |
Q |
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| T |
14750282 |
cagagctttggaatgagtaccaactattttttagtagaataaattgagttaaccaacaaggttt |
14750345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 32577926 - 32577858
Alignment:
| Q |
131 |
atctcagttcggaaaggtattcacattttagtgtctgacgcagctcgaatagcattacctccagtagag |
199 |
Q |
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| T |
32577926 |
atctcagctaggaaaggtatccacattcaagtgtttgacgcacctcgaataggattacctccagtagag |
32577858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 12733807 - 12733758
Alignment:
| Q |
150 |
ttcacattttagtgtctgacgcagctcgaatagcattacctccagtagag |
199 |
Q |
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| T |
12733807 |
ttcacgttttagtgtttgacgcagctcgaatagaattactttcagtagag |
12733758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 8963 - 9012
Alignment:
| Q |
150 |
ttcacattttagtgtctgacgcagctcgaatagcattacctccagtagag |
199 |
Q |
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| T |
8963 |
ttcacgttttagtgtttgacgcagctcgaatagaattacttccaatagag |
9012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 19780420 - 19780477
Alignment:
| Q |
37 |
tttggaatgagtaccaactattttcttacagaataaattgtgttaaccaacaaggttt |
94 |
Q |
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| T |
19780420 |
tttggaatgagtaccaattgttttctaatagaataagttgagttaatcaacaaggttt |
19780477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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