View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5251_low_6 (Length: 360)
Name: NF5251_low_6
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_low_6 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 40 - 353
Target Start/End: Complemental strand, 33390377 - 33390064
Alignment:
| Q |
40 |
gggtttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaata |
139 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390377 |
gggtttttgtacgtgatggtataattttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaata |
33390278 |
T |
|
| Q |
140 |
tattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatgg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390277 |
tattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatgg |
33390178 |
T |
|
| Q |
240 |
tgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390177 |
tgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgt |
33390078 |
T |
|
| Q |
340 |
tttattgatgatgt |
353 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33390077 |
tttattgatgatgt |
33390064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 44 - 353
Target Start/End: Complemental strand, 33402915 - 33402606
Alignment:
| Q |
44 |
ttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatatt |
143 |
Q |
| |
|
|||| ||| ||||| ||||||||| ||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33402915 |
ttttttacatgatgatataatgtttttgaacaacttttggaactttcaggccacaagctggagagattaaaaagattgttcaaaagataatgaatatatt |
33402816 |
T |
|
| Q |
144 |
ggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgtt |
243 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
33402815 |
ggagtgcaaatcttcatgtgtttcaaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttggttttggacttggttgatggtgtt |
33402716 |
T |
|
| Q |
244 |
catgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgtttta |
343 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||| ||||| | |
|
|
| T |
33402715 |
cgtgctataagaatttgtggaatgggaggaatagggaagacaacccttgctatgaatttatatggccaaatctctcatcgatttagtgcatcctgtttca |
33402616 |
T |
|
| Q |
344 |
ttgatgatgt |
353 |
Q |
| |
|
|||||||||| |
|
|
| T |
33402615 |
ttgatgatgt |
33402606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 43 - 353
Target Start/End: Original strand, 33642384 - 33642690
Alignment:
| Q |
43 |
tttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatat |
142 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
33642384 |
tttttgtacgtgatgatttaatgttattgaacaaa---ttgaa-tttcaggccacaagctgcagagattaaaaagattgttcaaaagataatcaatatat |
33642479 |
T |
|
| Q |
143 |
tggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgt |
242 |
Q |
| |
|
| |||||||| |||| | ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33642480 |
tagagtgcaagtctttaagtgtttcaaaagatttagttgggattgattctcctataaaagcattacaaaatcatttgcttttggactcagttgatggtgt |
33642579 |
T |
|
| Q |
243 |
tcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgtttt |
342 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33642580 |
tcgtgctataggaatttgtggaatgggaggaatagggaagacaacccttgctacggctttatatgaccaaatatctcatcgatttagtgcatcatgtttt |
33642679 |
T |
|
| Q |
343 |
attgatgatgt |
353 |
Q |
| |
|
||||||||||| |
|
|
| T |
33642680 |
attgatgatgt |
33642690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 61 - 353
Target Start/End: Original strand, 31566925 - 31567216
Alignment:
| Q |
61 |
taatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcat |
160 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
31566925 |
taatgttattgaacaacttttt-aactttcaggccacaatcttgagagattaaaaagattgctcaaacaataatgaatatattggagtgcaaatcttcat |
31567023 |
T |
|
| Q |
161 |
gtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttg |
260 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
31567024 |
gtgtttcaaaagatttagttgggattgattctcctatagaagcgttacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttg |
31567123 |
T |
|
| Q |
261 |
tggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
353 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31567124 |
tggaatggggggaatagggaagacagcccttgctgagactttatatggccaaatatctcatcgatttagtgcatcttgttatattgatgatgt |
31567216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 54 - 353
Target Start/End: Complemental strand, 33059854 - 33059555
Alignment:
| Q |
54 |
gatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaat |
153 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||||||||| || | | || |||||| |||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
33059854 |
gatgatataatgttactgaacaattttttgaactttcaggccactagctagagaaattaaagagattgttcaaaagataatcaatatattggaatgcaaa |
33059755 |
T |
|
| Q |
154 |
tcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctatag |
253 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
33059754 |
tattcatgtgtttcaaaagatttagttgggattgattctcctatacaagcattacaaaatcatttgcttttgaactcagttgatggtgttcgtgctatag |
33059655 |
T |
|
| Q |
254 |
gaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
33059654 |
gaatttgtggaatgggaggaatagggaaaacaacccttgctacgactttatatggccaaatatctcatcaatttagtgcatcttgttttattgacgatgt |
33059555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 62 - 333
Target Start/End: Complemental strand, 33306772 - 33306498
Alignment:
| Q |
62 |
aatgttattgaacaacattttgaact---ttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttc |
158 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||| | |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
33306772 |
aatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagataatgagtatattggagtgcaaatcttc |
33306673 |
T |
|
| Q |
159 |
atgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatt |
258 |
Q |
| |
|
|| | |||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
33306672 |
atatatttcaaaagatttagttgggattgattctcctatagaagcattaaaaaatcatttgcttttggactcggttgattgtgtttgtgctataggaatt |
33306573 |
T |
|
| Q |
259 |
tgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgca |
333 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33306572 |
tctggaatgggaggaatagggaagacaacccttgctatggctttatatgaccaaatatctcatcgatttagtgca |
33306498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 84 - 351
Target Start/End: Complemental strand, 9169034 - 9168768
Alignment:
| Q |
84 |
aactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtaggg |
183 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||| |||| ||||||||| |||| ||||||||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
9169034 |
aactttcaggccacaatctgctgagactaaaaagattgtacaaaagataatgaacatat-ggagtgcaaatcttcatgtgtttcaaaagatttagttggg |
9168936 |
T |
|
| Q |
184 |
attgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaaga |
283 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168935 |
attaattctcctatagaagcattacaaaatcatttgcttttggactcaattgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaaga |
9168836 |
T |
|
| Q |
284 |
caacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgat |
351 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9168835 |
caactcttgcaatggttttatatgaccaaatatctcatcgatttagtgcatcctgttttattgatgat |
9168768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 42 - 353
Target Start/End: Complemental strand, 33412256 - 33411945
Alignment:
| Q |
42 |
gtttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatata |
141 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
33412256 |
gtttttgtacgtgatgatataatgttattgaacaactttctgaactttcaggccacaagctggagagattaaaaagattgttcaaaatataatgaatata |
33412157 |
T |
|
| Q |
142 |
ttggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtg |
241 |
Q |
| |
|
||||| || || ||||||| |||| ||||||||||| ||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
33412156 |
ttggattgtaaatcttcattcatttcaaaagatttagttgggataaattctcggatagaagtattacaaaatcatttacttttggactcggttgatggtg |
33412057 |
T |
|
| Q |
242 |
ttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttt |
341 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||| |||||||||| |||||||||| |||||| |
|
|
| T |
33412056 |
tttgtgctattggaatttgtggaatgggcggaataggaaagacaacccttgctatgactttatatggccagatatctcatcaatttagtgcatcttgttt |
33411957 |
T |
|
| Q |
342 |
tattgatgatgt |
353 |
Q |
| |
|
||| || ||||| |
|
|
| T |
33411956 |
tatagacgatgt |
33411945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 43 - 353
Target Start/End: Complemental strand, 33360381 - 33360071
Alignment:
| Q |
43 |
tttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatat |
142 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||| || | | || |||||| || ||||||||| |||||| ||||||| |
|
|
| T |
33360381 |
tttttatacatgatgatataatgttattgaacaactttttgaactttcaggccactagctagagaaattaaagaggttgttcaaaagataatcaatatat |
33360282 |
T |
|
| Q |
143 |
tggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgt |
242 |
Q |
| |
|
|||| ||||| | |||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
33360281 |
tggaatgcaaatattcatgtgtttcaaaagatttagttgagattgattctcctatacaagcattacaaaatcatttgcttttgaactcggttgatggtgt |
33360182 |
T |
|
| Q |
243 |
tcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgtttt |
342 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||| |||||| ||||| | |||||||||| || |||| |
|
|
| T |
33360181 |
tcgtgctataggaatttgtggaattggaggaattgggaaaacaacccttgctacgactttatatggccaaatctctcaccaatttagtgcatcttttttt |
33360082 |
T |
|
| Q |
343 |
attgatgatgt |
353 |
Q |
| |
|
||||||||||| |
|
|
| T |
33360081 |
attgatgatgt |
33360071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 84 - 353
Target Start/End: Original strand, 31560628 - 31560897
Alignment:
| Q |
84 |
aactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtaggg |
183 |
Q |
| |
|
|||||||||||||||| | | ||||| ||||||||||||| | |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
31560628 |
aactttcaggccacaatctcgagagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttggg |
31560727 |
T |
|
| Q |
184 |
attgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaaga |
283 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560728 |
attaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaatgggaggaatagggaaga |
31560827 |
T |
|
| Q |
284 |
caacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
353 |
Q |
| |
|
|| ||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31560828 |
cagcccttgctatgactttgtatggccaaatatctcatcgatttagtgcatcctgttttattgatgatgt |
31560897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 41 - 353
Target Start/End: Complemental strand, 33274096 - 33273784
Alignment:
| Q |
41 |
ggtttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatat |
140 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| || |||||||||| |||||| |||| ||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
33274096 |
ggttttggtacgtgatgatataatattattgaaaaattttttgaacttacaggccgcaagctggagagattaaaaagattgttcaaacgatcttgaatat |
33273997 |
T |
|
| Q |
141 |
attggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggt |
240 |
Q |
| |
|
|||| ||| ||| ||||||||| |||| ||||||||||| ||||| ||||||| | |||| | ||||||||||||||| ||||||||||| ||||| || |
|
|
| T |
33273996 |
attgaagtacaaatcttcatgtttttcaaaagatttagttgggatagattctcgtttagacggattacaaaatcatttacttttggactcggttgacagt |
33273897 |
T |
|
| Q |
241 |
gttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgtt |
340 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
33273896 |
gttcgtgctataggaatttgtggaatgggaggaatagggaagacaacccttgctatggctttatatgatcaaatatctcatcgatttagtgcatcctgtt |
33273797 |
T |
|
| Q |
341 |
ttattgatgatgt |
353 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
33273796 |
ttatagatgatgt |
33273784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 41 - 353
Target Start/End: Complemental strand, 33264953 - 33264641
Alignment:
| Q |
41 |
ggtttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatat |
140 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| || |||||||||| |||||| |||| ||| |||||||||||||||||||||| |||||||| || |
|
|
| T |
33264953 |
ggttttggtacgtgatgatataatattattgaataattttttgaacttacaggccgcaagctggagagattaaaaagattgttcaaaagataatgagtac |
33264854 |
T |
|
| Q |
141 |
attggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggt |
240 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||| ||||| | ||| ||||||| | |||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
33264853 |
attggaatgcaaatcttcatgtgtttcaaaagacttagttgcgatagattctcgtttagaagcattacaaaatcatttccttttggacatggttgatggt |
33264754 |
T |
|
| Q |
241 |
gttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgtt |
340 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||||| | |||||||||| |||| |||| |
|
|
| T |
33264753 |
gttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaaatctgtcatcgatttgatgcatcctgtt |
33264654 |
T |
|
| Q |
341 |
ttattgatgatgt |
353 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
33264653 |
tcattgatgatgt |
33264641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 41 - 353
Target Start/End: Complemental strand, 33287846 - 33287534
Alignment:
| Q |
41 |
ggtttttgtacgtgatggtataatgttattgaacaacattttgaactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatat |
140 |
Q |
| |
|
||||||| |||||||| | |||| |||||||||||| |||||||| | |||||||||| || ||||||| || ||||||||| | |||||||||||| |
|
|
| T |
33287846 |
ggtttttctacgtgataatttaatattattgaacaactttttgaacgtccaggccacaatctgcagagattagaatgattgttcagacgataatgaatat |
33287747 |
T |
|
| Q |
141 |
attggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggt |
240 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||| | |||| |||||||||||||||| ||||||| |||||||| |||||| || |||||||| |
|
|
| T |
33287746 |
attggagtgcaaatcttcatgggtttcaaaagatttagttgcgattaattctcctatagaagccttacaaagtcatttgcatttggattcggttgatgga |
33287647 |
T |
|
| Q |
241 |
gttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgtt |
340 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||| |||||||| ||||||||||||| | ||||| |
|
|
| T |
33287646 |
gttcgtgcaataggaatttgtggaatgggaggaatagggaaaacaaccctttctatggctttatatgatcaaatatcccatcgatttagtggatcttgtt |
33287547 |
T |
|
| Q |
341 |
ttattgatgatgt |
353 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
33287546 |
ttattgaagatgt |
33287534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 13609093 - 13609164
Alignment:
| Q |
222 |
tttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgc |
293 |
Q |
| |
|
||||||||||| ||||| ||||| | | |||| |||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
13609093 |
tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgc |
13609164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 84 - 353
Target Start/End: Original strand, 17438647 - 17438916
Alignment:
| Q |
84 |
aactttcaggccacaagttggtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtaggg |
183 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||| |
|
|
| T |
17438647 |
aactttcaggccacaatgtgcagagattaaaaagattgttcaaaagataatgaatatattggaatgcaaatcttcatgtaattcaaaagatttagttggg |
17438746 |
T |
|
| Q |
184 |
attgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaaga |
283 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
17438747 |
ataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaaga |
17438846 |
T |
|
| Q |
284 |
caacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
353 |
Q |
| |
|
|||||||||| || |||||||| |||||| |||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
17438847 |
caacccttgctttggatttatatggccaaatctctcatcgatttgatgcatcttgtttcattgatgatgt |
17438916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 113 - 353
Target Start/End: Complemental strand, 8992 - 8752
Alignment:
| Q |
113 |
aaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaa |
212 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||| ||||||| ||||| ||||||||||| ||||| |||||| || |||||||||| || | |
|
|
| T |
8992 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
8893 |
T |
|
| Q |
213 |
tcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaa |
312 |
Q |
| |
|
||| || |||||| | || ||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
8892 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
8793 |
T |
|
| Q |
313 |
atatctcatcgatttagtgcaaattgttttattgatgatgt |
353 |
Q |
| |
|
|| | |||||||||| |||| ||||| ||||||||||| |
|
|
| T |
8792 |
atctgtcatcgatttgatgcatcctgtttcattgatgatgt |
8752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 113 - 327
Target Start/End: Complemental strand, 231 - 17
Alignment:
| Q |
113 |
aaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattacaaaa |
212 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||| ||||||| ||||| ||||||||||| ||||| |||||| || |||||||||| || | |
|
|
| T |
231 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
132 |
T |
|
| Q |
213 |
tcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaa |
312 |
Q |
| |
|
||| || |||||| | || ||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
131 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
32 |
T |
|
| Q |
313 |
atatctcatcgattt |
327 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
31 |
atctgtcatcgattt |
17 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 353
Target Start/End: Original strand, 31476812 - 31477062
Alignment:
| Q |
106 |
gagattaaaaagattgttcaaaggataatgaatatattggagtgcaa---ttcttcatgtgtttcgaaagatttagtagggattgattctcctatagaag |
202 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | ||| ||||| |||| |||||| ||| ||| || |||||||| ||||| |||||||||| | ||| |
|
|
| T |
31476812 |
gagattaaaaagatagttcaacggataataactattttggacagcaaattatcttcaagtgcttcaaacgatttagttgggatggattctcctagacaag |
31476911 |
T |
|
| Q |
203 |
cattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgacttt |
302 |
Q |
| |
|
|||| |||| | ||| ||||||||||| ||||||| |||||||| | ||||||||||||| ||||| |||||||||||||||||||||| |||| | | |
|
|
| T |
31476912 |
aattagaaaagcttttacttttggactctgttgatgatgttcatgttgtaggaatttgtgggatgggtggaatagggaagacaacccttggcatggttct |
31477011 |
T |
|
| Q |
303 |
atatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
353 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||| ||||||||||||||||| |
|
|
| T |
31477012 |
atatgatagaatttctcatcaatttggtgcatgctgttttattgatgatgt |
31477062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 353
Target Start/End: Original strand, 31501940 - 31502184
Alignment:
| Q |
109 |
attaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcattac |
208 |
Q |
| |
|
|||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| |||| || |||| ||||| |||| |||||||| |
|
|
| T |
31501940 |
attaaaaatatcgtccaaaggataataaatattttggattgcaactcatcatgtgtttcaaaagacatagttggaattgtttctcatatacaagcattag |
31502039 |
T |
|
| Q |
209 |
aaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatga |
308 |
Q |
| |
|
|||| | ||| || |||||||| ||||||| |||||| ||| ||||||| ||||| ||||| |||||||||||||||||||||| | | | ||||||| |
|
|
| T |
31502040 |
aaaaacttttactcttggactctgttgatgatgttcaagctgtaggaatctgtgggatgggtggaatagggaagacaacccttggtagggttctatatga |
31502139 |
T |
|
| Q |
309 |
ccaaatatctcatcgatttagtgcaaattgttttattgatgatgt |
353 |
Q |
| |
|
||| ||||||| |||| ||||| ||||||||| |||||||| |
|
|
| T |
31502140 |
tagaatttctcatcaatttggtgcatgttgttttatcgatgatgt |
31502184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 31496768 - 31496955
Alignment:
| Q |
106 |
gagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagcat |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| ||||| ||||| ||| ||||||||| || |||||||| ||||| || |||| ||| || || |
|
|
| T |
31496768 |
gagattaaaaaaattgttcaaaggataatggatattttggattgcaaatctatatgtgtttcaaatgatttagttgggatggactctcatatgcaaaaat |
31496867 |
T |
|
| Q |
206 |
tacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgc |
293 |
Q |
| |
|
|| |||| | ||| ||||||||||| ||| ||| || || || |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
31496868 |
tagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgc |
31496955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 31019913 - 31019782
Alignment:
| Q |
220 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
319 |
Q |
| |
|
||||||||||| ||||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| || || | ||||||||| ||||| |||| |
|
|
| T |
31019913 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31019814 |
T |
|
| Q |
320 |
atcgatttagtgcaaattgttttattgatgat |
351 |
Q |
| |
|
||| |||| |||| |||||||||||||||| |
|
|
| T |
31019813 |
atcaatttgatgcacgttgttttattgatgat |
31019782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 31150508 - 31150388
Alignment:
| Q |
173 |
atttagtagggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggagg |
272 |
Q |
| |
|
||||||| ||||| |||||||| || | | |||| |||| ||||| ||||||||||| |||||| ||| | || | ||||||||||||| ||||| || |
|
|
| T |
31150508 |
atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggatgggtgg |
31150409 |
T |
|
| Q |
273 |
aatagggaagacaacccttgc |
293 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
31150408 |
agtagggaagacaacccttgc |
31150388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 31029794 - 31029663
Alignment:
| Q |
220 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
319 |
Q |
| |
|
||||||||||| ||||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| || | | ||||||||| ||||| |||| |
|
|
| T |
31029794 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctgactactgctttatatggtcaaatctctc |
31029695 |
T |
|
| Q |
320 |
atcgatttagtgcaaattgttttattgatgat |
351 |
Q |
| |
|
||| |||| |||| |||||||||||||||| |
|
|
| T |
31029694 |
atcaatttgatgcacgttgttttattgatgat |
31029663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 351
Target Start/End: Original strand, 31489633 - 31489764
Alignment:
| Q |
220 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
319 |
Q |
| |
|
||||||||||| |||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| || || | ||||||||| ||||| |||| |
|
|
| T |
31489633 |
cttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31489732 |
T |
|
| Q |
320 |
atcgatttagtgcaaattgttttattgatgat |
351 |
Q |
| |
|
||| |||| |||| |||||||||||||||| |
|
|
| T |
31489733 |
atcaatttgatgcacgttgttttattgatgat |
31489764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 31159362 - 31159295
Alignment:
| Q |
220 |
cttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaac |
287 |
Q |
| |
|
||||||||||| ||||||| ||||| | | ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
31159362 |
cttttggactccgttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaac |
31159295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 31161794 - 31161692
Alignment:
| Q |
181 |
gggattgattctcctatagaagcattacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaataggga |
280 |
Q |
| |
|
||||| ||||||| || ||||| |||| |||| ||||| |||||||| || ||||||| ||| | | | ||||| ||||||| ||||| |||||||||| |
|
|
| T |
31161794 |
gggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgcgggttgtaggagtttgtgggatgggtggaataggga |
31161695 |
T |
|
| Q |
281 |
aga |
283 |
Q |
| |
|
||| |
|
|
| T |
31161694 |
aga |
31161692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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