View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5251_low_7 (Length: 331)
Name: NF5251_low_7
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 29143184 - 29142867
Alignment:
| Q |
1 |
atcatgcggcagaaaatttcttcataaacatttataaggcactgcaacgacattgttatgatacaa-tgatggagtcagaactcctatgtaaagccgggc |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29143184 |
atcatgcggcagaaaatatcttcataaacatttataaggcactgcaacgacattgttatgatacaaatgatggagtcagaactcctatgtaaagccgggc |
29143085 |
T |
|
| Q |
100 |
aacaagactgccaggtggatgcggttagaaatgatgcggaaatcaaagagagtataagaagctgcatgaagctatgcacacaccggcttgcagagaccag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||| |
|
|
| T |
29143084 |
aacaagactgccaggtggatgcggttagaaatgatgcggaaatcaaagagagtataagaagctgcatgaagctgtgcacacaccagctcgcagaaaccag |
29142985 |
T |
|
| Q |
200 |
aagccaaactagcagtctgaacagtccgaaattaccactgcaaaaccatgacagaaaaaagcagaccaccgaagcaaactaaagtcaggcagccccaaaa |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29142984 |
aagccaaactagcagtcagaacagtccgaaattaccactgcaaaaccatgacagaaaaaagcagaccaccgaagcaaactaaagtcaggcagccccaaaa |
29142885 |
T |
|
| Q |
300 |
caaaatatacatcttatc |
317 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
29142884 |
caaaatatacatcttatc |
29142867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 29139727 - 29139640
Alignment:
| Q |
50 |
acattgttatgatacaa-tgatggagtcagaactcctatgtaaagccgggcaacaagactgccaggtggatgcggttagaaatgatgc |
136 |
Q |
| |
|
|||||||||| |||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29139727 |
acattgttataatacaaatggtggagtcgacactcccatgtaaagccgggcaacaagactgccaggtggaggcggttaggaatgatgc |
29139640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 32958729 - 32958811
Alignment:
| Q |
171 |
ctatgcacacaccggcttgcagagaccagaagccaaactagcagtctgaacagtccgaaattaccactgcaaaaccatgacag |
253 |
Q |
| |
|
||||| ||||||| ||| ||||| |||| ||||||||||||||||| ||||| | |||| || |||| ||||||||||||| |
|
|
| T |
32958729 |
ctatgtacacaccagctcgcagaaaccataagccaaactagcagtcacaacagcctgaaactaacactctaaaaccatgacag |
32958811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University