View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5251_low_8 (Length: 317)
Name: NF5251_low_8
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 38959788 - 38960044
Alignment:
| Q |
1 |
caaggacaatccggagactgatgagtgtcgcacatatgataactgaatgatactatcaaatcaaatctccctttt-attatcatttctgttgtgtattaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38959788 |
caaggacaatccggagactgatgagtgtcgcacatatgataactgaatgatactatcaaatcaaatctccctttttattatcatttctgttgtgtattaa |
38959887 |
T |
|
| Q |
100 |
ttcattttcatttaagcatgattgaataatccatatataccatctttacaagt--nnnnnnnnnnnctagttataattctagcttcatcctattactttt |
197 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
38959888 |
ttaattttcatttaagcatgattgaataatccatatataccatctttacaagtaaaaaaaaaaaaactagttataattctagc-tcatcctattactttt |
38959986 |
T |
|
| Q |
198 |
gtttataatatagctgtttttatctatataaaatttctagatatggctatcctttttt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38959987 |
gtttataatatagctgtttttatctatataaaatttgtagatatggctatcctttttt |
38960044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 38960065 - 38960101
Alignment:
| Q |
256 |
gtacaactatattcaaatggttttatggggtggttag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38960065 |
gtacaactatattcaaatggttttatggggtggttag |
38960101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University