View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5251_low_9 (Length: 307)
Name: NF5251_low_9
Description: NF5251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5251_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 34473202 - 34473482
Alignment:
| Q |
10 |
aaatgaaagttgatatatttaacggatctaaaacatatttaactcttatttttaacaccaaatttattagcttccctacttagtctattttgtgtatgtg |
109 |
Q |
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||||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473202 |
aaatgaaagttgatatatttagcggacctaaaacatattcaacccttatttttaacaccaaatttattagcttccctacttagtctattttgtgtatgtg |
34473301 |
T |
|
| Q |
110 |
tctatttcatgaatttcaattactaggctaatttgagtttcccttttgttcctttgatcttttaagaaatgtagttaagcgcaagaacacacccattggt |
209 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34473302 |
tctatttcatgaatttcaatttctaggctaatttgagtttcccttttgttcctttgatcttttaagaaatgtagttaggcgcaagaacacacccattggt |
34473401 |
T |
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| Q |
210 |
gtatgcatgttctatgcccatgaaatttatgataattttcaaattagtcatttcccagtttctgattagtcacttcctaac |
290 |
Q |
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| T |
34473402 |
gtatgcatgttctatgcccatgaaatttatgataattttcaaattagtcatttcccagtttctgattagtcacttcctaac |
34473482 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 26241002 - 26240953
Alignment:
| Q |
15 |
aaagttgatatatttaacgg-atctaaaacatatttaactcttattttta |
63 |
Q |
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|||||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
26241002 |
aaagttgatatatttataggtatcaaaaacatatttaactcttattttta |
26240953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 538942 - 538990
Alignment:
| Q |
15 |
aaagttgatatatttaacggatctaaaacatatttaactcttattttta |
63 |
Q |
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||||||| |||||||| ||||| |||||||||||||| |||||||||| |
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| T |
538942 |
aaagttggtatatttataggatcaaaaacatatttaacccttattttta |
538990 |
T |
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