View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252-Insertion-1 (Length: 870)
Name: NF5252-Insertion-1
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 7261639 - 7261858
Alignment:
| Q |
8 |
ttcttaactgattgcactattatttaacttatatgcatgcaccactttgcaaatgatataacgtaatttaaaagaactaaaatagtgtgtaggacgccca |
107 |
Q |
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| T |
7261639 |
ttcttaactgacagcacaattatttaactgatatgcatgcaccaatttgcaaatgatataacgtaatttataagaactaaaattgtgtgtaggacgcc-a |
7261737 |
T |
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| Q |
108 |
aacggtcgcaggaactcaaatgctgtagcaaaatatctagcacagagcactcatttgatatttgatgctacaaacaaagaatcctctatcttagttgatg |
207 |
Q |
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| T |
7261738 |
aacggtcgcagaaactaaaatgctggagcaaaatatctagaacagagcacccatttgatatttgatggtacaaacaaagaatcctctatcttagttgatg |
7261837 |
T |
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| Q |
208 |
ttaacacagtaacaatacatg |
228 |
Q |
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| T |
7261838 |
ttagcacaataacaatacatg |
7261858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 7261880 - 7261945
Alignment:
| Q |
290 |
atttattttt-tgttaaagaccaaactgtcatagacttttttgttagaaattaaaat-aaacttag |
353 |
Q |
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|||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||| |||||||| |
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| T |
7261880 |
atttatttttatgttaaagaccaaactgtcttggatttttctgtttgaaattaaaatgaaacttag |
7261945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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