View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252-Insertion-2 (Length: 810)
Name: NF5252-Insertion-2
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 7 - 810
Target Start/End: Complemental strand, 38386254 - 38385451
Alignment:
| Q |
7 |
ataaagtgcatatattctgatatgacagcttctcattctcactattatgactatatttttcttgca-gtttaaattaagatagcattacgtttttgaatt |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38386254 |
ataaagtgcatatattctgatatgacagcttctcattctcactattatcattatatttttcttgcaagtttaaattaagatagcattacgtttttgaatt |
38386155 |
T |
|
| Q |
106 |
tgatatggttctttaacacagaaatccaacaaaacaatatggccaaatggacaatggcttatgtcatttttaaccacatcaaactctttatccaactata |
205 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38386154 |
tgatatgattctttaacacacaaatccaacaaaacaatatggccaaatggacaatggcttatgtcatttttaaccacatcaaactctttatccaactata |
38386055 |
T |
|
| Q |
206 |
aatatacattttgcatgtcattgagttaacatattttttaaagaccttaattacttacttcaatgctttcttcgttctgttttcttcttctaatctaatc |
305 |
Q |
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||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38386054 |
aatatacattttgcatgccatttagttaacat--ttttaaaagaccttaattacttacttcaatgctttcttcgttctgttttcttcttctaatctaatc |
38385957 |
T |
|
| Q |
306 |
agtttcctcttaaataaacaatctatcataaacttattagtataattaagatgctgaaatctttgacgaaaatcttatcccttcaatcaaactacggcat |
405 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38385956 |
agtttcctcttaaataaactatctatcataaacttattagtataattaagatgctgaaatctttgacgaaaatcttatcccttcaatcaaactacggcat |
38385857 |
T |
|
| Q |
406 |
aaagcaaaggcgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtagagggaaaacaaacactgcaattgtga |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
38385856 |
aaagcaaaggcgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtaga-ggaaaacagacactgcaattgtga |
38385758 |
T |
|
| Q |
506 |
tctcaccattgctgaggatagaaataacactactactgcagaaggcgtcaatgtcgatgtggaacatgattctaatgctgatagttcttttgctcatgct |
605 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38385757 |
tcacaccattgctgaggatagaaataacactactactgcagaaggcgtcaatgtcgacgtggaacatgattctaatgctgatagttcttttgctcatgct |
38385658 |
T |
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| Q |
606 |
gttatcaacatggtgggaatgctcataggtaaattttgcatattgcttcttatttgtgattgccgtgtgttgcagagaaactc-aaaaatgggtaagaaa |
704 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||| |||||||| | ||| |
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| T |
38385657 |
gttatcaacatggtgggaatgctcataggtaaattttgcatattgcttcttatttgtgatt-ccttgtgttgca-agaaactcaaaaaatggtttgtaaa |
38385560 |
T |
|
| Q |
705 |
tatacgaaaacatgtgttggct-ggaactgatcttc-ttcgtgtgataatttttacc-gaaggtgtcgaga-gaaatttccacccttcaattctctctta |
800 |
Q |
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|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
38385559 |
tata-gaaaacatgtgttggctgggaactgatcttctttcgtgtgataatttttaccggaaggtgtccagaggaaatttccacccttcaattctctctta |
38385461 |
T |
|
| Q |
801 |
acgactttga |
810 |
Q |
| |
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|||||||||| |
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| T |
38385460 |
acgactttga |
38385451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 503
Target Start/End: Complemental strand, 29439471 - 29438979
Alignment:
| Q |
13 |
tgcatatattctgatatgacagcttctcattctcactattatgactatatttttcttgca-gtttaaattaagatagcattacgtttttgaatttgatat |
111 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
29439471 |
tgcatatattctgatatgacagtgtctcattctcactattgtcactatattttgcttgcaagtttaaattaagattgcattacgtttttgaatttgatat |
29439372 |
T |
|
| Q |
112 |
ggttctttaac-acagaaatccaacaaaacaatatggccaaatggacaatggcttatgtcatttttaaccacatcaaactctttatccaactataaatat |
210 |
Q |
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| ||||||| | ||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
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| T |
29439371 |
gattctttatccacacaaatccaacaaaagaagatggccaaatggacaatggcttatgtcatgtttatccacatcaaactccttatccaactataaatat |
29439272 |
T |
|
| Q |
211 |
acattttgcatgtcattgagttaacatatttttt--aaagaccttaattacttacttcaatgctttcttcgttctgttttcttcttctaatctaatcagt |
308 |
Q |
| |
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|||||||||||| |||| ||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29439271 |
acattttgcatgccatttagttagcagattttattaaaagaccttaattacttacttcaatgctttcttcgttctgttttcttcttctaatc-----agt |
29439177 |
T |
|
| Q |
309 |
ttcctcttaaataaacaatctatcataaacttattagtataattaagatgctgaaatctttgacgaaaatcttatcccttcaatcaaacta----cggca |
404 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
29439176 |
ttcctcttaaataaattatctatcgtaaacttattagtataattaagatgctgaaatctttgaggaaaatcttatcccttcaatcaaactatggctggca |
29439077 |
T |
|
| Q |
405 |
taaagcaaaggcgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtagagggaaaacaaacactgcaattgt |
503 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29439076 |
taaagcaaagacgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtaga-ggaaaacaaacactgcaattgt |
29438979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 29442116 - 29442008
Alignment:
| Q |
13 |
tgcatatattctgatatgacagcttctcattctcactattatgactatatttttcttgca-gtttaaattaagatagcattacgtttttgaatttgatat |
111 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
29442116 |
tgcatatattctgatatgacagtgtctcattctcactattgtcactatattttgcttgcaagtttaaattaagattgcattacgtttttgaatttgatat |
29442017 |
T |
|
| Q |
112 |
ggttcttta |
120 |
Q |
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| ||||||| |
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| T |
29442016 |
gattcttta |
29442008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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