View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252-Insertion-3 (Length: 380)
Name: NF5252-Insertion-3
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 184 - 380
Target Start/End: Original strand, 44534045 - 44534242
Alignment:
| Q |
184 |
gaggtgttagtagccgttatgaagttgtgacaacaaataaactttcatcaatggacacagttgtatgagacaagataaggaagcttctcattggatgtaa |
283 |
Q |
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| T |
44534045 |
gaggtgttagtagccgttatgaagttgtgacaacaaataaactttcatcaatggacacaattgtatgagacaagataaggaagcgtctcattggatgtaa |
44534144 |
T |
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| Q |
284 |
acaaaagacacaaagattgacctaaatcctctacatctgc-gtatcgtgttgtacctgtagaaatttttagattttgaagagaatttttctctttaaa |
380 |
Q |
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| T |
44534145 |
acaacagacacaaagattgacctagatcctctgcatctgcagtatcgtgttgtacctatagaaatttttagattttgaagagaatttttctctttaaa |
44534242 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 44533869 - 44533930
Alignment:
| Q |
8 |
attgatggtgcagccagaacaacaatggagacctccaactacatttgaagagggtgatgtgg |
69 |
Q |
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| T |
44533869 |
attgatggtgcagccagaacaacaatggagacctccaactacatttgaagagggtgatgtgg |
44533930 |
T |
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