View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5252-Insertion-4 (Length: 343)

Name: NF5252-Insertion-4
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5252-Insertion-4
NF5252-Insertion-4
[»] chr2 (1 HSPs)
chr2 (7-79)||(12818574-12818646)
[»] scaffold0125 (2 HSPs)
scaffold0125 (7-84)||(20186-20263)
scaffold0125 (285-340)||(19977-20033)
[»] chr4 (4 HSPs)
chr4 (7-84)||(10660049-10660126)
chr4 (7-84)||(10874194-10874271)
chr4 (296-340)||(10660613-10660657)
chr4 (296-340)||(10874758-10874802)
[»] chr5 (2 HSPs)
chr5 (30-84)||(21843612-21843666)
chr5 (285-340)||(21843819-21843875)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 12818646 - 12818574
Alignment:
Q  7 acttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagata 79  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12818646 acttcattagtttcatatacaattttttaggaattcccttttgattcttttttttgggtattctttgaagata 12818574  T

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Target: scaffold0125 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 20263 - 20186
Alignment:
Q  7 acttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 84  Q
    ||||||||||||||||| | |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20263 acttcattagtttcataaaaaaaaatttagaaattcccttttgattcttgtttttgggtattctttgaagatatctat 20186  T

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Target: scaffold0125; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 20033 - 19977
Alignment:
Q  285 gttgatttttat-gttgtgctgttctgctatctgcatttagccggttctgtttgtct 340  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||    
T  20033 gttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtct 19977  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 10660049 - 10660126
Alignment:
Q  7 acttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 84  Q
    |||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10660049 acttcattagtttcatataattttttttaggaattcccttttgatttttgtttttgggtattctttgaagatatctat 10660126  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 10874194 - 10874271
Alignment:
Q  7 acttcattagtttcatatacaaatttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 84  Q
    |||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10874194 acttcattagtttcatataattttttttaggaattcccttttgatttttgtttttgggtattctttgaagatatctat 10874271  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 10660613 - 10660657
Alignment:
Q  296 tgttgtgctgttctgctatctgcatttagccggttctgtttgtct 340  Q
    ||||||||| || |||||||||||||||||||||||| |||||||    
T  10660613 tgttgtgctattatgctatctgcatttagccggttctttttgtct 10660657  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 10874758 - 10874802
Alignment:
Q  296 tgttgtgctgttctgctatctgcatttagccggttctgtttgtct 340  Q
    ||||||||| || |||||||||||||||||||||||| |||||||    
T  10874758 tgttgtgctattatgctatctgcatttagccggttctttttgtct 10874802  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 21843612 - 21843666
Alignment:
Q  30 tttttaggaattcccttttgattcttgtttttgggtattctttgaagatatctat 84  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21843612 tttttagaaattcccttttgattcttgtttttgggtattctttgaagatatctat 21843666  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 21843819 - 21843875
Alignment:
Q  285 gttgatttttat-gttgtgctgttctgctatctgcatttagccggttctgtttgtct 340  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  21843819 gttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtct 21843875  T

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