View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252_high_3 (Length: 439)
Name: NF5252_high_3
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 34447749 - 34447428
Alignment:
| Q |
18 |
aggaattagctccatatccaagtatgattcaaaactttgattatggtaatattgtgttccattatttgagttcattggtgcttgaacattgccacaattc |
117 |
Q |
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| T |
34447749 |
aggaattagctccatatccaagtatgattcaaaactttgattatggtaatattgtgttccattatttgagttcattggtgcttgaacattgccacaattc |
34447650 |
T |
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| Q |
118 |
acaacactaacacttgaatttgccattacacttccaagaatatctatctcctcttgcaagctagcaacctgcacaattacacataagaaaatatgtctcc |
217 |
Q |
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| T |
34447649 |
acaacactaacacttgaatttgccattacacttccaagaatatctatctcctcttgcaagctagcaacctgcacaattacacataagaaaatatgtctcc |
34447550 |
T |
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| Q |
218 |
tcttgccattacacccccacaattatgtgtaggtcagggctgtgtagagagcttttgaggcctaagaaattttttgtggagagactttgtaagatctaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34447549 |
tcttgccattacacccccacaattatgtgtaggtcagggctgtgtagagagcttttgaggccttagaaattttttgtggagagactttgtaagatctaac |
34447450 |
T |
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| Q |
318 |
ttcttatttataacaagcacaa |
339 |
Q |
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|||||||||| ||||||||||| |
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| T |
34447449 |
ttcttatttacaacaagcacaa |
34447428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 34447393 - 34447340
Alignment:
| Q |
373 |
agtaaggatggatcaagaacgttggagtaatggaggtaaaatcatatgctagaa |
426 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |
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| T |
34447393 |
agtaaggatggatcaagaaagttggagtaatggaggtaaagtcatatactagaa |
34447340 |
T |
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