View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252_high_8 (Length: 251)
Name: NF5252_high_8
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6390878 - 6390640
Alignment:
| Q |
1 |
gtcaacaaccaacgtaaaactttgtcgaattttttatgacattggatcaaatatgttatagatagtgtttgcagaacatgtaaaaataaaattaatccgt |
100 |
Q |
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| T |
6390878 |
gtcaacaaccaacgtaaaactttgtcgaattttttatgacat-ggatcaaatatgttatagatagtgtttgcagaacatgtaaaaataaaattaatccgt |
6390780 |
T |
|
| Q |
101 |
tatttaaaaactacactacaatctctttattcatttcctttaagctagaaaagcatgaatttaataaaaccagattgttgaaacggcgtagttttggacc |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6390779 |
tatttaaaaactacactacaatctccttattcatttcctttaagctagaaaagcatgaatttaataaaaccagattgttgaaacggcgtagttttggacc |
6390680 |
T |
|
| Q |
201 |
ttttataagaaaaaagtaccaaaatgtgctccaagttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6390679 |
ttttataagaaaaaagtaccaaaatgtgctccaagttcat |
6390640 |
T |
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