View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252_low_1 (Length: 520)
Name: NF5252_low_1
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 285 - 424
Target Start/End: Complemental strand, 36246178 - 36246041
Alignment:
| Q |
285 |
ttctacaaacttttgtattttaatttgttgtatatatatctctagcttctaataagatttaatagctttaaaaatctcagtctcacagtgatgtgatgtt |
384 |
Q |
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| T |
36246178 |
ttctacaaacttta-tattttaatttgttgtatatatatgtctagcttctaatagggtttaatagctttaaagatct--gtctcatagtgatgtgatgtt |
36246082 |
T |
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| Q |
385 |
ggtgattcatgtattcctc-ggtatgtgaattgtatatcat |
424 |
Q |
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| T |
36246081 |
ggtgattcatgtattcctctggtatgtgaattgtttatcat |
36246041 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 36253061 - 36252981
Alignment:
| Q |
162 |
ttgtggaagtgcttgtttgcactcaagattgtctgaaagga-tctcctttctaaaacttatttgatgaggaccttgaagaa |
241 |
Q |
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| T |
36253061 |
ttgtggaagtgcttgtttgcactcaagattgcctaaaaagaatctcctttctcaaacttatttgatggggaccttgaagaa |
36252981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 11155754 - 11155710
Alignment:
| Q |
477 |
tagcatctaatagcttt-aaaaatcttttttcagagataatttct |
520 |
Q |
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| T |
11155754 |
tagcatctaatagcttttaaaaatcttttttcagagataatttct |
11155710 |
T |
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