View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252_low_4 (Length: 346)
Name: NF5252_low_4
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 75 - 331
Target Start/End: Complemental strand, 968498 - 968242
Alignment:
| Q |
75 |
aaatcagaaacctaaggggcataaaccgaactcattgaaaacgaaaattacatactattataaagatctcccttggattggatattatgaacaattgtgt |
174 |
Q |
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| T |
968498 |
aaatcagaaacctaagaggcataaaccgaactcattgaaaatgaaaattacatactattataaagatctcccttggattagatattatgaacaattgtgt |
968399 |
T |
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| Q |
175 |
tctctgatttttcttggaaatattttttgaacttgaagagaacttgaataaaaccttggctatgatgctatatttgttgttatgtgatagttgattcaaa |
274 |
Q |
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| T |
968398 |
tctctgatttttcttggaaatattttttgaacttgaagagaacttgaataaaaccttggctatgatgctatatttgttgttatgagatagttgattcaaa |
968299 |
T |
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| Q |
275 |
tgagttgaacccaaaaaactagttaataaattttttaaaacattggctcctctgtgt |
331 |
Q |
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| T |
968298 |
tgagttgaacccaaaaaactagttaatagaatttttaaaaccttggctcctctgtgt |
968242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 968965 - 968907
Alignment:
| Q |
25 |
aagatagaatttgttttatatgctaatagatattattacaaaaaataggaaaatcagaa |
83 |
Q |
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| T |
968965 |
aagatagaatttgttttatatgctaatatatattattacaaaaaataggaaaatcagaa |
968907 |
T |
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