View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252_low_5 (Length: 315)
Name: NF5252_low_5
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 37155007 - 37154699
Alignment:
| Q |
1 |
caataccctcaatcgcagccacaacaacaccagcaaccagaacatcccagtcaccggtttgaccaaggattgtggctagtgcatttgccgtgtagaaacc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155007 |
caataccctcaattgcagccacaacaacaccagcaaccagaacatcccagtcaccggtttgaccaaggattgtggctagtgcatttgccgtgtagaaacc |
37154908 |
T |
|
| Q |
101 |
caaaagcagcaggaatactttcgtagggaagttctttctagctgaattcagcttatccagaagttgtctgccacctgcacttagtatcctacccaatcga |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154907 |
caaaagtagcaggaatactttcgtagggaagttctttctagctgaattcagcttatctagaagttgtctgccacctgcacttagtatcctacccaatcga |
37154808 |
T |
|
| Q |
201 |
gtgccacctaaactggaaccagaatcatttaggctttgttgctcaccattaccagacaatccatctgtgttcaacgccaaagctactgtccacccaggtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37154807 |
gtgccacctaaactggaaccagaatcatttaggctttgttgctcaccattaccagacaatccatctgtgttcaacgcaaaagctactgtccacccaggtc |
37154708 |
T |
|
| Q |
301 |
ttcatctca |
309 |
Q |
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||| ||||| |
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| T |
37154707 |
ttcttctca |
37154699 |
T |
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