View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5252_low_8 (Length: 274)
Name: NF5252_low_8
Description: NF5252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5252_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 11155402 - 11155668
Alignment:
| Q |
7 |
acatcatcacaaaacactaaaatggtgccatagaatcaatttgttccgagcattaaacctataagtaagtaattcaccaacatcacaaattaagatcaat |
106 |
Q |
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| T |
11155402 |
acatcatcacaaaacactaaaatgctgccatagaatcaatttgttcctagcattaaacctataagtaagtaattcagcaacatcacaaattaagatcaat |
11155501 |
T |
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| Q |
107 |
ttatcaacacagcaacaaacatgtaattcacctacataagtttgaaggccttaaaatatgcctctaaaaatactaaaatgtattgacatggaagaaaaac |
206 |
Q |
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| T |
11155502 |
ttatcaacacagcagcaa-catgtaattcatctacataagtttgaaggccttaaaatatgcctctaaaaatactaaaatatattgacatggaagaaaaac |
11155600 |
T |
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| Q |
207 |
taatagtaagttaatagcctttcatcaatcaacataaaaccnnnnnnnctctccatcaatcagccacc |
274 |
Q |
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| T |
11155601 |
taatagtaagttaatagcctctcatcaatcaacataaaaccaaaaaaactctccatcaatcagccacc |
11155668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 36245635 - 36245789
Alignment:
| Q |
85 |
aacatcacaaattaagatcaatttatcaacacagcaacaaacatgtaattcacctacataagtttgaaggccttaaaatatgcctctaaaaatactaaaa |
184 |
Q |
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|||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| || || |||| |||||||||||||| || |
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| T |
36245635 |
aacaacacaaattaagatcaatatatcaacacatcaaca----tgtaattcacctacataagtttgaaggatttgaagtatgactctaaaaatactataa |
36245730 |
T |
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| Q |
185 |
tgtattgacatggaagaaaaactaatagtaagttaatagcctttcatcaatcaacataaaac |
246 |
Q |
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| T |
36245731 |
tgtattgacat---agaaaaactaatagtaagttaatagcctctcatcaatcgacataaaac |
36245789 |
T |
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