View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253-Insertion-1 (Length: 786)
Name: NF5253-Insertion-1
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 701; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 8 - 782
Target Start/End: Complemental strand, 1537496 - 1536722
Alignment:
| Q |
8 |
aactcatcgttgaaatggaccaaattaacctccctcctacacccaccacttttttcatcctcattaaaagacttatctctgctaatttaacccgtcaagc |
107 |
Q |
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| T |
1537496 |
aactcattgttgaaatggaccaaattaacctccctcctacacccaccacttttttcatcctcattaaaagacttatctctgctaatttaacccgtcaagc |
1537397 |
T |
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| Q |
108 |
cgttcgcgctttcaatgaaatcgaatcgtatacagatactaaattaacatcagaccatttcacttacttgcttgacacgttatgtaagtatggttacgtt |
207 |
Q |
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| T |
1537396 |
cgttcgcgctttcaatgaaatcgaatcgtatacagatactaaattaacatcagaccatttcacttacttgcttgacacgttatgtaagtatggttacgtt |
1537297 |
T |
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| Q |
208 |
aaacacgcttgcgagttgtttaacagaaattctaatagatttgtagctgatgtcaaaatgtatactgttttgatatatggttggtgtaagattggaaggt |
307 |
Q |
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| T |
1537296 |
aaacacgcttgcgagttgtttaacagaaattctaatagatttgtagctgatgtcaaaatgtatactgttttgatatatggttggtgtaagattggaaggt |
1537197 |
T |
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| Q |
308 |
ttaagacggcattgtcgtttttgaatgagatgaaggtgaagggagttgaaccaaatgttgttacttataatgtgatattgaatgggatatgtcgaaaggc |
407 |
Q |
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| T |
1537196 |
ttaagacggcattgtcgtttttgaatgagatgaaggtgaaaggagttgaaccaaatgttgttacttataatgtgatattgaatgggatatgtcgaaaggc |
1537097 |
T |
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| Q |
408 |
gagtttgcatccggaggagagatttgagaggactataagggatgcagagaaggtgtttgatgaaatgcgtgagagtgggattgagccggatgtgactagc |
507 |
Q |
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| T |
1537096 |
aagtttgcatccggaggagagatttgagaggactataagggatgcagagaaggtgtttgatgaaatgcgtgagagtgggattgagccggatgtgactagc |
1536997 |
T |
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| Q |
508 |
ttttcgattgttttgcatgtttatagtagggcgcataagccgcagttggttttggataagttgggtttgatgaaggagaaagggatttgtccgaatgtgg |
607 |
Q |
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| T |
1536996 |
ttttcgattgttttgcatgtttatagtagggcgcataagccgcagttggttttggataagttgggtttgatgaaggagaaagggatttgtccgaatgtgg |
1536897 |
T |
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| Q |
608 |
tcacttatacatcggtgattaagtgtctttgttcgtgtgggaggattgaaga-gcggaggatttgattgatgagatggtggagggatggtgtgagtcctt |
706 |
Q |
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| T |
1536896 |
tcacttatacgtcggtgattaagtgtctttgttcgtgtgggaggattgaagaggcggaggatttgattgatgagatggt-gaggaatggtgtgagtcctt |
1536798 |
T |
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| Q |
707 |
gtgctgcgacgtataattgtttctttaaagagtatagaagggagg-aggatgcgaataaggtttgaaagttttttaa |
782 |
Q |
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| T |
1536797 |
gtgctgcgacgtataattgtttctttaaggagtatag-agggaggaaggatgcagataaggctttgaagttttttaa |
1536722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 485
Target Start/End: Original strand, 25994704 - 25994747
Alignment:
| Q |
442 |
ataagggatgcagagaaggtgtttgatgaaatgcgtgagagtgg |
485 |
Q |
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| T |
25994704 |
ataagggatgcaatgaaggtgtttgatgaaatgcttgagagtgg |
25994747 |
T |
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