View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253-Insertion-3 (Length: 400)
Name: NF5253-Insertion-3
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 29718474 - 29718866
Alignment:
| Q |
8 |
gctttctcctccaagctctattcaatatattttccatcattattggcattaaattttgttttgttgtccttccagtctttatgcttattgctatatgcgt |
107 |
Q |
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| T |
29718474 |
gctttctcctccaagctctattcaatatactttccatcattattggcattaaattttgttttgttgtccttccactctttatgcttattgctatatgcgt |
29718573 |
T |
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| Q |
108 |
tggcttttatgcaattcaattgcgtgtgataattatcgagtgataacattaatagtagtataaataaaattgaagctgtacttggaagcagactctttag |
207 |
Q |
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| T |
29718574 |
tggcttttatgcaattcaattgcgtgtgataattatcgagtgataacattaatagtagtataaataaaattgaagctatacttggaagcagactctttag |
29718673 |
T |
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| Q |
208 |
cttaacttggaagcaacaagaatctcagttagaaatgaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaact |
307 |
Q |
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| T |
29718674 |
cttaacttggaagcaacaagaatctcagttagaaatgaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaact |
29718773 |
T |
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| Q |
308 |
tttaggaaatgaattagaataaattgagtttgaataaaaagctttcaatttttcttatcttagttgctgtgtgtctgatgaaattaaatgttc |
400 |
Q |
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| T |
29718774 |
tttaggaaatgaattagaataaattgagtttgaatagaaagctttcaatttatcttatcttagttgctgtgtgtctgatgagattaaatgttc |
29718866 |
T |
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