View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5253-Insertion-4 (Length: 399)
Name: NF5253-Insertion-4
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253-Insertion-4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 8519000 - 8518621
Alignment:
| Q |
8 |
tgcaaaagacatggtaattaagctgaaaaacgagcttatgttgaatagttacaagacaattgatggtagaggttttaaggttgaaattgcaaatggagct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8519000 |
tgcaaaagacatggtaattaagctgaaaaacgagcttatgttgaatagttacaagacaattgatggtagaggttttaaggttgaaattgcaaatggacct |
8518901 |
T |
|
| Q |
108 |
tgtattacaatacataatgttagtcatgtgattgtgcatggaattatgattcattattgtaaaccaagtaatcctggtttggttagaagtagtagtattg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8518900 |
tgtattacaatacataatgttagtcatgtgattgtgcatggaattatgattcattattgtaaaccaagtaatcctggtttggttagaagtagtagtattg |
8518801 |
T |
|
| Q |
208 |
aacatgctgtacatcgtcaacgttctgatggtgatggaa-tagtgtttttgcttcttctaatatttggattgatcattgcttcttgtcaagatgtactga |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
8518800 |
aacatgttgtacatcgtcaacgttctgatggtgatggaattagtgtttttgcttcttctaatatttggattgatcattgctatttggcaagatgtactga |
8518701 |
T |
|
| Q |
307 |
tggacttattgatgttattcacaactcaactaatgtcactatctcaaataaattacttcaccctgcatgacaaggttagca |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8518700 |
tggacttattgatgttattcacaactcaactaatgtcactatgtcaaat-aattacttcaccctgcatgacaaggttagca |
8518621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 8527089 - 8526712
Alignment:
| Q |
10 |
caaaagacatggtaattaagctgaaaaacgagcttatgttgaatagttacaagacaattgatggtagaggttttaaggttgaaattgcaaatggagcttg |
109 |
Q |
| |
|
|||| |||||||||||||| ||||||| || ||||| ||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||| | || |
|
|
| T |
8527089 |
caaatgacatggtaattaaattgaaaaatgaacttattgtgaatagttacaaaacaattgatggtagaggtgctaaagttgaaattggaaatggaccatg |
8526990 |
T |
|
| Q |
110 |
tattacaatacataatgttagtcatgtgattgtgcatggaattatgattcattattgtaaaccaagtaatcctggtttggttagaagtagtagtattgaa |
209 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
8526989 |
tattacaatacagggtgttagtcatgtgattgtgcatggtattagtattcatgattgtaaaccaagtaatcctggtatggtt---aggagtagtattgaa |
8526893 |
T |
|
| Q |
210 |
catgctgtacatcgtcaacgttctgatggtgatggaat-agtgtttttgcttcttctaatatttggattgatcattgcttcttgtcaagatgtactgatg |
308 |
Q |
| |
|
|||| || |||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8526892 |
catgttggttatcgacaaggttctgatggtgatggtataagtgtttttgcttcttctaatatttggattgatcattgctacttggcaagatgtactgatg |
8526793 |
T |
|
| Q |
309 |
gacttattgatgttattcacaactcaactaatgtcactatctcaaataaattacttcaccctgcatgacaaggttagcaaat |
390 |
Q |
| |
|
|||||| |||||||| || ||||||| |||||||||||||||| ||||||||||| | ||||||||| || ||||||| |
|
|
| T |
8526792 |
gacttactgatgttacccatgcctcaactcttgtcactatctcaaat-aattacttcactcagcatgacaaagtaagcaaat |
8526712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 55373934 - 55373805
Alignment:
| Q |
49 |
tgaatagttacaagacaattgatggtagaggttttaaggttgaaattgcaaatggagcttgtattacaatacataatgttagtcatgtgattgtgcatgg |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||| |||| ||||||| |||||||||||||||| |||||||||||| ||| | ||||| |
|
|
| T |
55373934 |
tgaatagttacaagactattgatggtagaggagttaaagttgagattggaaatggaccttgtattacaatacaaggtgttagtcatgttattatacatgg |
55373835 |
T |
|
| Q |
149 |
aattatgattcattattgtaaaccaagtaa |
178 |
Q |
| |
|
||||| |||||| |||||||||||||||| |
|
|
| T |
55373834 |
aattagcattcatgattgtaaaccaagtaa |
55373805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 55373731 - 55373658
Alignment:
| Q |
254 |
tttgcttcttctaatatttggattgatcattgcttcttgtcaagatgtactgatggacttattgatgttattca |
327 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||| | | | ||||||||||| |||||| ||||||| |
|
|
| T |
55373731 |
tttgcttcctcaaatatttggattgatcattgctttttggctcgttcaactgatggactaattgatattattca |
55373658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 7593679 - 7593607
Alignment:
| Q |
57 |
tacaagacaattgatggtagaggttttaaggttgaaattgcaaatggagcttgtattacaatacataatgtta |
129 |
Q |
| |
|
||||||||||||||||| |||||| || ||| | ||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
7593679 |
tacaagacaattgatggaagaggtgctagtgttcacattgcaaatggtggatgtattacaatacattatgtta |
7593607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University