View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253-Insertion-6 (Length: 311)
Name: NF5253-Insertion-6
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 40614312 - 40614030
Alignment:
| Q |
8 |
attttggacctgatgtaactaaaaattgggctcatcacctcaacctataaacaacacttaaattagaagttagaatgcgactcctcttatcaatatttcc |
107 |
Q |
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| T |
40614312 |
attttggacctgatgtaactaaaaattgggttcatcacctcaaccta--------------attagaagttagaatgcgactcctcttatcaatatttcc |
40614227 |
T |
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| Q |
108 |
agcatcaatcatgcaagaaagaannnnnnnngaagaagggtaaaatgagatatattaatgctaaatctca-tctctacagcacaaggtgtatcgagaaag |
206 |
Q |
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| T |
40614226 |
agcatcaatcatgcaagaaataattttttt-----aagggtaaaatgaaatatattaatgctaaatctcactctctaccgcacaaggtgtatcgagaaag |
40614132 |
T |
|
| Q |
207 |
aggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaaggattaagc |
306 |
Q |
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| T |
40614131 |
aggataaaaaaattatataattttgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacattaaaggattaagc |
40614032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 40617629 - 40617343
Alignment:
| Q |
8 |
attttggacctgatgtaactaaaaattgggctcatcacctcaacctataaacaacacttaaattagaagttagaatgcgactcctcttatcaatatttcc |
107 |
Q |
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| T |
40617629 |
attttggacctgatgtaactaaaaattgggttcatcacctcaaccta--------------attagaagttagaatgcgactcctctcatcaatatttcc |
40617544 |
T |
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| Q |
108 |
agcatcaatcatgcaagaaagaannnnnnnngaagaagggtaaaatgagatatattaatgctaaatctca-tctctacagcacaaggtgtatcgagaaag |
206 |
Q |
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| T |
40617543 |
agcatcaatcatgcaagaaaga-ttttttttgaagaagggtaaaatgaaatacattactgctaaatcgcactctctccaatataaggtgtactgaagaag |
40617445 |
T |
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| Q |
207 |
aggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaaggattaagc |
306 |
Q |
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| T |
40617444 |
aggttaaaaaagttatataattgtgttacaaaacccgcaagagcaaaaccaaggagtgaaacaaaatcaacatatgcccacacacaacaaaaggttaagc |
40617345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 12243807 - 12243742
Alignment:
| Q |
223 |
ataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccaca |
288 |
Q |
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| T |
12243807 |
ataaatgtgtttcaaaaaccgcaagaacaaaaccaaggaaagaaacaaagtcagcctatgcccaca |
12243742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 41238349 - 41238405
Alignment:
| Q |
243 |
gcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaagg |
299 |
Q |
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| T |
41238349 |
gcaagaacaaaaccaaggaaagaaacaaaatcagtctatgcccgtacacatcaaagg |
41238405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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