View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253-Insertion-7 (Length: 42)
Name: NF5253-Insertion-7
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 35; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 12208460 - 12208426
Alignment:
| Q |
8 |
ttggcagactaaagcaagccgacataatattgttt |
42 |
Q |
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| T |
12208460 |
ttggcagactaaagcaagccgacataatattgttt |
12208426 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 31709672 - 31709705
Alignment:
| Q |
8 |
ttggcagactaaagcaagccgacataatattgtt |
41 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31709672 |
ttggcagactaaagcaagccgacataatattgtt |
31709705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 14674020 - 14674052
Alignment:
| Q |
8 |
ttggcagactaaagcaagccgacataatattgt |
40 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
14674020 |
ttggtagactaaagcaagccgacataatattgt |
14674052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 27; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 4282187 - 4282153
Alignment:
| Q |
8 |
ttggcagactaaagcaagccgacataatattgttt |
42 |
Q |
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|||| ||||||||||||||||||||||| |||||| |
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| T |
4282187 |
ttggtagactaaagcaagccgacataatgttgttt |
4282153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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