View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253_high_1 (Length: 473)
Name: NF5253_high_1
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 40615020 - 40614659
Alignment:
| Q |
12 |
tcatcagcaatagaatgaagaatcttatcgtattcaagaatcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataaca |
111 |
Q |
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| T |
40615020 |
tcattagcaatagaatgaagaatcttatcatattcaagaatcaagaccaagattctgaacaatagtaggaagacattgaacatcgggacgagagataaca |
40614921 |
T |
|
| Q |
112 |
cggagagtgagattcaccgggtcatgatcatcggtagcgaagatggctgagagagtgtgag----------gacatccaagatgtagggcttttgaaccc |
201 |
Q |
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| T |
40614920 |
cggagagtgagattcaccggctcatgatcatcggtagcgaagatggctgagagagtgtgagtacgagcgcggacatccaagatgtagggcttttgaaccc |
40614821 |
T |
|
| Q |
202 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgtcgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
301 |
Q |
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| T |
40614820 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgccgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
40614721 |
T |
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| Q |
302 |
gagacccaaagccaagcgtgctttcttggagaggatggatgctattgctttgctgcttatca |
363 |
Q |
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| T |
40614720 |
gagacccaaagccaagcgagctttcttggagacgatggatgctattgctttgctgcttatca |
40614659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 52 - 271
Target Start/End: Complemental strand, 40611046 - 40610817
Alignment:
| Q |
52 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
151 |
Q |
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| T |
40611046 |
tcaagaccaagattctgaacaatagtaggaagacgttgaacctcgggacgagagataacacggagagtgagattcaccggctcatgatcatcggtagcgg |
40610947 |
T |
|
| Q |
152 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattctgg |
241 |
Q |
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| T |
40610946 |
agatggctgagagcctgtgagtacgagggcggaggtcgaagatgtagggcttttgaacccatgggatcttgaaatgaattcctttgccgacggatctggg |
40610847 |
T |
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| Q |
242 |
aagagtgtcgtggaattggtcgacaaggac |
271 |
Q |
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| T |
40610846 |
aagagtgccgtggaatcggtcgacgaggac |
40610817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 473
Target Start/End: Complemental strand, 40614583 - 40614549
Alignment:
| Q |
439 |
aataaataaatgtggcgaaacacctgtgacttgtc |
473 |
Q |
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| T |
40614583 |
aataaataaatgtggcgaaacacctgtgacttgtc |
40614549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 40610743 - 40610698
Alignment:
| Q |
315 |
aagcgtgctttcttggagaggatggatgctattgctttgctgctta |
360 |
Q |
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| T |
40610743 |
aagcgtgctttcttgaagaggttggatgcttttgcttggctgctta |
40610698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 238
Target Start/End: Original strand, 1385032 - 1385228
Alignment:
| Q |
52 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
151 |
Q |
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|||||||| ||||||||||||||||||||||||| || || ||| |||||||||| |||||| ||||||||||||||| | | |||| | |||| || |
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| T |
1385032 |
tcaagaccgagattctgaacaatagtaggaagacgttcagtatcaggacgagagagaacacgaagagtgagattcaccatctgaagatctttggtaccgg |
1385131 |
T |
|
| Q |
152 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattc |
238 |
Q |
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| T |
1385132 |
agatggatgagaatgtgtgaggtcgagtgcggatatcgaagacgtaaggcttttgaacccatgggatgaggaaatgagttccttcaccgactgattc |
1385228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 231814 - 231737
Alignment:
| Q |
52 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcacc |
129 |
Q |
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|||||||||| |||| |||||||||||||||||||||||| ||| |||||||||| |||||| ||||| | ||||||| |
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| T |
231814 |
tcaagaccaaaattccgaacaatagtaggaagacattgagtatcaggacgagagagaacacgaagagtaaaattcacc |
231737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 18133313 - 18133264
Alignment:
| Q |
180 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcacc |
229 |
Q |
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|||||||| |||||||||||||||||||| |||||||| ||||||||||| |
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| T |
18133313 |
aagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcacc |
18133264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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