View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253_low_10 (Length: 242)
Name: NF5253_low_10
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 40614517 - 40614308
Alignment:
| Q |
19 |
taaatgtggccaaaagggtgtgtgccttgtagaagaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggata |
118 |
Q |
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| T |
40614517 |
taaatgtggccaaaagggtgtg--ccttgtagaagaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggata |
40614420 |
T |
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| Q |
119 |
ataaatctaatttaa---tacaagcaaatcaaataccatcaaacctaagtaccccaagaaagcaacgtatgctctcaattaaagactgagcacatggaga |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40614419 |
ataaatctaatttaatagtacaagcaaatcaaataccatcaaacctaagtaccccaagaaagcaacgtatgctctcaattaaagactgagcacatggaga |
40614320 |
T |
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| Q |
216 |
tgcatttatttt |
227 |
Q |
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|||||||||||| |
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| T |
40614319 |
tgcatttatttt |
40614308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 40610556 - 40610375
Alignment:
| Q |
19 |
taaatgtggccaaaagggtgtgtgccttgtagaagaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggata |
118 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
40610556 |
taaacgtggccaaaagggtgtg--ccttgtagaaggggaaaattatacaacctgccactaaaataa-aaattaccctcaaacccaaccgaaacagggata |
40610460 |
T |
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| Q |
119 |
ataaatctaatttaatacaagcaaatcaaataccatca---aacctaagtaccccaagaaagcaacgtatgctctcaattaaagactgag |
205 |
Q |
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||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
40610459 |
ataaatctaat-----acaagaaaatcaaataccatcatcaaacctaagtaccccaagaaagcaacttaagctctcaattaaagactgag |
40610375 |
T |
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