View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253_low_2 (Length: 420)
Name: NF5253_low_2
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 48268490 - 48268381
Alignment:
| Q |
1 |
agcaaaggccacggagtccgggcgcaccgagtcagctcagggaacatagccaacagagtagtaacactaaacaattctaaaaccagagacacaaatctga |
100 |
Q |
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| T |
48268490 |
agcaaaggccacggagtccgggcgcaccgagtcagctcagggaacatagccaacagagtagtaacactaaacaattctaaaaccagagacacaaatctga |
48268391 |
T |
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| Q |
101 |
ctccacctca |
110 |
Q |
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|||||||||| |
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| T |
48268390 |
ctccacctca |
48268381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 298 - 404
Target Start/End: Complemental strand, 48268193 - 48268087
Alignment:
| Q |
298 |
accgttgaagtttgaaaacctgcaactgaaaacagcatcttggtatcagttgaaaaaaccaccaaaactgtagacaacaagaatcttttgccaagtatgg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48268193 |
accgttgaagtttgaaaacctgcaactgaaaacagcatcttggtatcagttgaaaaaaccaccaaaactgtagacaacaagaatcttttgccaagtatgg |
48268094 |
T |
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| Q |
398 |
aataaat |
404 |
Q |
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||||||| |
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| T |
48268093 |
aataaat |
48268087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 48268318 - 48268261
Alignment:
| Q |
173 |
agattcataccataccaccaacacttttacaagcttcaagttccaaatccaacatgtg |
230 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48268318 |
agattcataccataccaccaacacttttaaaagcttcaagttccaaatccaacatgtg |
48268261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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