View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5253_low_3 (Length: 346)

Name: NF5253_low_3
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5253_low_3
NF5253_low_3
[»] chr3 (4 HSPs)
chr3 (13-201)||(21966567-21966765)
chr3 (13-201)||(21989003-21989201)
chr3 (34-204)||(21966963-21967144)
chr3 (34-204)||(21989399-21989580)
[»] chr2 (2 HSPs)
chr2 (201-329)||(45622387-45622515)
chr2 (167-204)||(3833504-3833541)
[»] chr6 (2 HSPs)
chr6 (34-200)||(20487184-20487361)
chr6 (34-204)||(20481638-20481819)
[»] chr8 (2 HSPs)
chr8 (34-203)||(24860149-24860329)
chr8 (39-200)||(24858944-24859115)
[»] scaffold0625 (1 HSPs)
scaffold0625 (138-204)||(8000-8066)
[»] chr7 (1 HSPs)
chr7 (138-204)||(18993631-18993697)
[»] chr4 (1 HSPs)
chr4 (167-216)||(11384176-11384225)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 21966765 - 21966567
Alignment:
Q  13 tgaaacgttccacatcagcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatg 112  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21966765 tgaaacgttcgacatcagcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatg 21966667  T
Q  113 gacgaatcttaattaaaggacca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 201  Q
    |||||||||||||||||||||||           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21966666 gacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct 21966567  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 21989201 - 21989003
Alignment:
Q  13 tgaaacgttccacatcagcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatg 112  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21989201 tgaaacgttcgacatcagcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatg 21989103  T
Q  113 gacgaatcttaattaaaggacca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 201  Q
    |||||||||||||||||||||||           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21989102 gacgaatcttaattaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct 21989003  T

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Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 21966963 - 21967144
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21966963 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21967062  T
Q  134 ca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 204  Q
    ||           ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21967063 caaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcctaaa 21967144  T

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Target: chr3; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 21989399 - 21989580
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21989399 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21989498  T
Q  134 ca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 204  Q
    ||           ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21989499 caaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcctaaa 21989580  T

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Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 201 - 329
Target Start/End: Original strand, 45622387 - 45622515
Alignment:
Q  201 taaatttaacaatatatcaatgactatgacattaattaactgcacttgatcagctttcccattctagatgttgccttggggcagtaccccatgaatccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622387 taaatttaacaatatatcaatgactatgacattaattaactgcacttgatcagctttcccattctagatgttgccttggggcagtaccccatgaatccat 45622486  T
Q  301 gaatttaataacgtggcatacatacatac 329  Q
    |||||||||||||||||||||||||||||    
T  45622487 gaatttaataacgtggcatacatacatac 45622515  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 3833541 - 3833504
Alignment:
Q  167 taattatttaagggaccagatatataattaagcctaaa 204  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  3833541 taattatttaagggaccaattatataattaagcctaaa 3833504  T

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Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 20487184 - 20487361
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  20487184 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggac 20487283  T
Q  134 c-----------aaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 200  Q
    |           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20487284 caaaatgagactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 20487361  T

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Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 20481819 - 20481638
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| | ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20481819 ccataagcgccacatcagcaaccatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 20481720  T
Q  134 ca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 204  Q
    ||           ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20481719 caaaatgagactaaaattaaataagggaccaaaccgaattttggtaattatttaagggaccagatatataattaagcctaaa 20481638  T

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Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 24860149 - 24860329
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||  ||||||  ||||||||||||| ||||||||||||||| | ||||||||||||||    
T  24860149 ccataagcgccacatcagcgaccatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggac 24860248  T
Q  134 caaaat-----------taattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaa 203  Q
    ||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860249 caaaatgagtctaaaaataattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaa 24860329  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 24859115 - 24858944
Alignment:
Q  39 agcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaa 138  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||| ||| |||||||| ||| |||||||||||| | |||||||||||||||||||    
T  24859115 agcgccacatcagcgcccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaa 24859016  T
Q  139 t-----------taattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 200  Q
    |           |||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  24859015 tgaacctaaaaataattaagggaccaaaacgaattttgataattatttaa-ggcctagatatataattaagcc 24858944  T

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Target: scaffold0625 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 8000 - 8066
Alignment:
Q  138 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 204  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  8000 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 8066  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 18993697 - 18993631
Alignment:
Q  138 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 204  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  18993697 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 18993631  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 11384225 - 11384176
Alignment:
Q  167 taattatttaagggaccagatatataattaagcctaaatttaacaatata 216  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||    
T  11384225 taattatttaagggaccatttatataattaagcctaaattaaactatata 11384176  T

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