View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5253_low_5 (Length: 336)
Name: NF5253_low_5
Description: NF5253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5253_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 49171388 - 49171080
Alignment:
| Q |
11 |
cacagagacagaaaattttgcaaatctatttccatccattaattgacacgcaaaaagctttnnnnnnnnnnnntcacaatattttgtaattattattgag |
110 |
Q |
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| T |
49171388 |
cacagagacagaaaattttgcaaatcaatttccatccattaattgacacgcaaaaagctttaaaaaaaaaaaatcacaatattttgtaattattattgag |
49171289 |
T |
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| Q |
111 |
aaaagtaaaataccatgaagtggtcgagttgtttattatcatcgttatcaagcatgccctgttgtcctaaggcagagtacttggcaacaacattctgcga |
210 |
Q |
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| T |
49171288 |
aaaagtaaaataccatgaagtggtcgagttgtttattatcatcgttatcaagcatgccctgttgtcctaaggcagagtacttggcaacaacattctgcga |
49171189 |
T |
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| Q |
211 |
ctctgccagctgagcatcgatcctgggcaactggtcaaccggcgtggcgattcttaaacacgacacgtgtgctgatagaagctgttcatacaacgggtgc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171188 |
ctctgccagctgagcatcgatcctgggcaactggtcaaccggcgtggcgattcttaaacacgacacgtgtgctgatagaagctgttcatacaacgggtgc |
49171089 |
T |
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| Q |
311 |
gccattatt |
319 |
Q |
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| T |
49171088 |
gccattatt |
49171080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 315
Target Start/End: Original strand, 2746462 - 2746604
Alignment:
| Q |
173 |
tgtcctaaggcagagtacttggcaacaacattctgcgactctgccagctgagcatcgatcctgggcaactggtcaaccggcgtggcgattcttaaacacg |
272 |
Q |
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||||| || |||||||| ||||| || |||||||| |||| ||| | ||| ||||| ||||| || ||||| || |||||||| || || || ||||||| |
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| T |
2746462 |
tgtccaaaagcagagtatttggccaccacattctgagactgtgctaactgtgcatcaatcctcggtaactgatccaccggcgttgctatcctcaaacacg |
2746561 |
T |
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| Q |
273 |
acacgtgtgctgatagaagctgttcatacaacgggtgcgccat |
315 |
Q |
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| T |
2746562 |
ccacatgtgccgacaacaactgttcatacaacggatgtgccat |
2746604 |
T |
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