View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5254-Insertion-2 (Length: 705)
Name: NF5254-Insertion-2
Description: NF5254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5254-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 615; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 8 - 704
Target Start/End: Original strand, 3642714 - 3643405
Alignment:
| Q |
8 |
actacatgcataaaaaactcaaatataagtaatatgatcagggaggagagaacactatcctcttgcattatttgaaacatactgaatgcttcatttccat |
107 |
Q |
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| T |
3642714 |
actacatgcataaaaaactcaaatataagtaatatgatcagggagtagagaacactatccacttgcattatttgaaacatactgaatgcttcatttccat |
3642813 |
T |
|
| Q |
108 |
gatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttcttttccaaactcttaaaaatattttgtgcactccctagttcaccatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
3642814 |
gatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttcttttccaaactcttaaaaatatt--gtgcacttcctagttcaccatt |
3642911 |
T |
|
| Q |
208 |
cttggcatacatgtccaaaagagcagttgccaatgaaatatcttttgcagcattgcttttcaatagacaaccatgaacagtttttcccaatcccaatgcc |
307 |
Q |
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| T |
3642912 |
cttggcatacatgtccaaaagagcagttgccaatgaaatatcttttgcagcattgcttttcaatagacaaccatgaacagtttttcccaatcccaatgcc |
3643011 |
T |
|
| Q |
308 |
aaagcagtgggactcaaaataagagttgattgtagtgcaactaactactacatcagagattgaattcttaagagtatgt-ggcatataattctaagagac |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3643012 |
aaagcagtgggactcaaaataagagttgattgtagtgcaactaactactacatcagagattgaattcttaagagtatgtcggcatataattctaagagac |
3643111 |
T |
|
| Q |
407 |
acaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataataatcatgaatatcatgaatttaatatttggcaattcataagttgttgt |
506 |
Q |
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| T |
3643112 |
acaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataataatcatgaatatcatgaatttaatatttggcaattcataagttgttat |
3643211 |
T |
|
| Q |
507 |
tggtttcatgacggtctatgtgtgtatttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataagaatcaaaactcgc |
606 |
Q |
| |
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| T |
3643212 |
tggtttcatgacggcctatgtgtgtatttattttctttgattgatgataatgttacaggaataaagaagaaatttgcggtgtataagaatcaaaactcgc |
3643311 |
T |
|
| Q |
607 |
aagttactaagcgaaacttacaatccatgaggggatgtttctagacggctcaactatccgtcatgttaaggagttcgacaaggtgaaaatgagcagaa |
704 |
Q |
| |
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| T |
3643312 |
aagttactaagcg-aacttacaatccatga-gggatgtttctagacggctcaactatccgtcatgttaa-gagttcaacaa-gtgaaaatgagcagaa |
3643405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 9807257 - 9807553
Alignment:
| Q |
8 |
actacatgcataaaaaactcaaatataagtaatatgatcagggaggagagaacactatcctcttgcattatttgaaacatactgaatgcttcatttccat |
107 |
Q |
| |
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|||||||||| | ||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
9807257 |
actacatgcaaataaaactccaatgtaagtaatatgatcagggactagagaac--tatcctcttgcattatttgaaacaaactcaatgcttcatttccat |
9807354 |
T |
|
| Q |
108 |
gatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttcttttccaaac---tcttaaaaatattttgtgcactccctagttcacc |
204 |
Q |
| |
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|| |||||||||||||| |||| ||||| |||||||||||||| ||||| || |||||||||| | |||||||| ||||| ||||| |||| |||||| |
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| T |
9807355 |
gaccatgtatggctaaagcatttatcatactagtccacatcactacatcctttttttccaaactattattaaaaatcttttgcgcacttcctaattcacc |
9807454 |
T |
|
| Q |
205 |
attcttggcatacatgtccaaaagagcagttgccaatgaaatatcttttgcagcattgcttttcaatagacaaccatgaacagtttttcccaatcccaa |
303 |
Q |
| |
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||| ||||||||||| ||||||||||||||||| | | |||||||||||| ||||||||||||||| || ||||||| |||| ||||||| |||| |
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| T |
9807455 |
atttttggcatacatatccaaaagagcagttgcaagggcaatatcttttgccatgttgcttttcaatagataagcatgaaccgtttctcccaatgccaa |
9807553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 10761021 - 10761147
Alignment:
| Q |
100 |
atttccatgatcatgtatggctaaaccattaatcatgctagtccacatcaccacatctttcttttccaaac---tcttaaaaatattttgtgcactccct |
196 |
Q |
| |
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||||||||| | |||||||||||||||||| |||| |||||||||||||| |||||||||||| | |||| | ||||||| ||| ||||| | ||| |
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| T |
10761021 |
atttccatgtgcttgtatggctaaaccatta-tcattctagtccacatcactacatctttctttcctaaacaattattaaaaacctttagtgcatttcct |
10761119 |
T |
|
| Q |
197 |
agttcaccattcttggcatacatgtcca |
224 |
Q |
| |
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| T |
10761120 |
aattcaccattcttagcatacatttcca |
10761147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 10760970 - 10760999
Alignment:
| Q |
61 |
actatcctcttgcattatttgaaacatact |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
10760970 |
actatcctcttgcattatttgaaacatact |
10760999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 593
Target Start/End: Original strand, 44878605 - 44878665
Alignment:
| Q |
533 |
tttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataag |
593 |
Q |
| |
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|||||||||| |||| ||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
44878605 |
tttatttactgtgattgatgataatgttataggaataaagaagaaatttgtggtgtataag |
44878665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 593
Target Start/End: Complemental strand, 44881316 - 44881256
Alignment:
| Q |
533 |
tttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataag |
593 |
Q |
| |
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|||||||||| |||| ||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
44881316 |
tttatttactgtgattgatgataatgttataggaataaagaagaaatttgtggtgtataag |
44881256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 459
Target Start/End: Original strand, 33987658 - 33987770
Alignment:
| Q |
352 |
ctactacatcagagattgaattcttaagagtatgt-ggcatataattctaagagacac----aacagtgggactcaaaaggaatgaatgaacccaaagat |
446 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | ||||||||||||||| |||||| ||| |||| |||||||| ||||||||||| ||||||| |
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| T |
33987658 |
ctactacatcgcagtttgaattcttaagagtattttggcatataattctaacagacacgcacaactgtggcactcaaaacaaatgaatgaacacaaagat |
33987757 |
T |
|
| Q |
447 |
gaatgatataata |
459 |
Q |
| |
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||| ||||||||| |
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| T |
33987758 |
gaaagatataata |
33987770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 8975317 - 8975375
Alignment:
| Q |
352 |
ctactacatcagagattgaattcttaagagtatg-tggcatataattctaagagacaca |
409 |
Q |
| |
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||||||||||| || ||||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
8975317 |
ctactacatcacagtttgaattcttaagagcatgttggcatataattctaacagacaca |
8975375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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