View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5254-Insertion-4 (Length: 138)

Name: NF5254-Insertion-4
Description: NF5254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5254-Insertion-4
NF5254-Insertion-4
[»] chr6 (4 HSPs)
chr6 (7-90)||(2619716-2619799)
chr6 (8-90)||(2586026-2586109)
chr6 (34-90)||(2677785-2677842)
chr6 (34-82)||(2645355-2645403)
[»] chr8 (1 HSPs)
chr8 (77-138)||(22889659-22889720)
[»] chr7 (1 HSPs)
chr7 (14-48)||(36398525-36398559)
[»] chr5 (1 HSPs)
chr5 (7-46)||(35070003-35070042)
[»] chr1 (1 HSPs)
chr1 (7-46)||(16771306-16771345)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 6e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 2619716 - 2619799
Alignment:
Q  7 aacactggacacatcttcaatcagacgtgtcggtgctacaaagttgttaattatatattttttcttatgtggcagggttttagg 90  Q
    ||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  2619716 aacactggacacgccttcaatcagaagtgtcgatgctacaaagttgttaattatatattttttcctatgtggcagggctttagg 2619799  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 2586026 - 2586109
Alignment:
Q  8 acactggacacatcttcaatcagacgtgtcggtgctacaaagttgttaattatatat-tttttcttatgtggcagggttttagg 90  Q
    |||||||||||| | | ||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  2586026 acactggacacaccattaatcagaagtgtcggttctacaaagttgttgattatatatatttttcttatgtggcagggctttagg 2586109  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 2677842 - 2677785
Alignment:
Q  34 tgtcggtgctacaaagttgttaattatata-ttttttcttatgtggcagggttttagg 90  Q
    ||||| ||||| | |||||||||||||||| ||||||||||||||| |||| ||||||    
T  2677842 tgtcgttgctaaatagttgttaattatataattttttcttatgtggtagggctttagg 2677785  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 2645403 - 2645355
Alignment:
Q  34 tgtcggtgctacaaagttgttaattatatattttttcttatgtggcagg 82  Q
    |||||||| || || |||||||||||||||||||| |||||||| ||||    
T  2645403 tgtcggtgttataatgttgttaattatatatttttccttatgtgacagg 2645355  T

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Target: chr8 (Bit Score: 58; Significance: 9e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 22889720 - 22889659
Alignment:
Q  77 ggcagggttttaggctattattgtgtcttgtattgtctatgtagttgtcatcttcactttgg 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22889720 ggcagggttttaggctattattgtgtcttgtattgtctatgtagttgtcttcttcactttgg 22889659  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 36398525 - 36398559
Alignment:
Q  14 gacacatcttcaatcagacgtgtcggtgctacaaa 48  Q
    |||||||||||||||||| ||||||||||||||||    
T  36398525 gacacatcttcaatcagaagtgtcggtgctacaaa 36398559  T

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Target: chr5 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 35070042 - 35070003
Alignment:
Q  7 aacactggacacatcttcaatcagacgtgtcggtgctaca 46  Q
    |||||| |||||| ||||||||||| ||||||||||||||    
T  35070042 aacactagacacaccttcaatcagaagtgtcggtgctaca 35070003  T

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Target: chr1 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16771306 - 16771345
Alignment:
Q  7 aacactggacacatcttcaatcagacgtgtcggtgctaca 46  Q
    ||||||||||||| ||||||||||| |||||| |||||||    
T  16771306 aacactggacacaccttcaatcagaagtgtcgatgctaca 16771345  T

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