View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5254_high_1 (Length: 631)
Name: NF5254_high_1
Description: NF5254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5254_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 17 - 620
Target Start/End: Complemental strand, 52972232 - 52971632
Alignment:
| Q |
17 |
catatccctatataacttggacttcctttcggtattttcatctaaaaggtccataattgtcatcaattgaactacaaaaggtgatttgttaggctcccca |
116 |
Q |
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| T |
52972232 |
catatccctatataacttggacttcctttcggtattttcatctaaaaggtccataattgtcatcaattgaactacaaaaggtgatttgttaggctctcca |
52972133 |
T |
|
| Q |
117 |
tctaaattttgatcccttgttttatcattgttttcttcgttttgaatatctgcagtggatgtggatgtacccttattattattattactatcatcaacat |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52972132 |
tctaaattttgatcccttgttttatcgttgttttcttcgttttgaatatctgcggtggatgtggatgtacccttattattatta---ctatcatcaacat |
52972036 |
T |
|
| Q |
217 |
aatggtgtcctatagtagcaagataatcatctgaacaatattggtaaaacacttgctccaacgtcactttgtattcacatgcatatttaagataattcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972035 |
aatggtgtcctatagtagcaagataatcatctgaacaatattggtaaaacacttgctccaacgtcactttgtattcacatgcatatttaagataattcat |
52971936 |
T |
|
| Q |
317 |
gacataacgagtcaatggatgaaccgctccatatgggacgggaatcctttcattatcacccttgatggagttttccaaatcataaaacatcgaaacgaca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971935 |
gacataacgagtcaatggatgaaccgctccatatgggacgggaatcctttcattatcacccttgatggagttttccaaatcataaaacatcgaaacgaca |
52971836 |
T |
|
| Q |
417 |
gcctttattattccatgctttgtcatagtcatctcgtatgccaaatccttggcacattgctctaagccatcatcattaatgagtgtaatgacaggttcca |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
52971835 |
gcctttattattccatgctttgtcatagtcatctcgtatgccaaatccttggcacattgctctaaaccatcaccattaatgagtgtaatgacaggttcca |
52971736 |
T |
|
| Q |
517 |
cgtcatccctcaaggtctcatacatatctaggaatttgaacaatttctctgatgatggcttggttaaaaccactgcttgagcaaaattgagaaaattgat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971735 |
cgtcatccctcaaggtctcatacatatctaggaatttgaacaatttctctgatgatggcttggttaaaaccactgcttgagcaaaattgagaaaattgat |
52971636 |
T |
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| Q |
617 |
gatg |
620 |
Q |
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|||| |
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| T |
52971635 |
gatg |
52971632 |
T |
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