View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5254_high_3 (Length: 426)

Name: NF5254_high_3
Description: NF5254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5254_high_3
NF5254_high_3
[»] chr7 (2 HSPs)
chr7 (4-411)||(23135231-23135640)
chr7 (71-107)||(8309359-8309395)
[»] chr5 (1 HSPs)
chr5 (28-263)||(19990359-19990598)
[»] scaffold0466 (1 HSPs)
scaffold0466 (15-233)||(4669-4891)
[»] chr8 (3 HSPs)
chr8 (17-233)||(25621745-25621964)
chr8 (145-233)||(25809117-25809205)
chr8 (27-107)||(10516770-10516850)
[»] chr2 (2 HSPs)
chr2 (28-201)||(18114670-18114842)
chr2 (63-107)||(29966494-29966538)
[»] chr4 (4 HSPs)
chr4 (99-195)||(1185826-1185922)
chr4 (79-406)||(24715982-24716315)
chr4 (71-106)||(17651276-17651311)
chr4 (63-107)||(19053281-19053325)
[»] chr6 (1 HSPs)
chr6 (163-263)||(33546129-33546228)
[»] chr1 (3 HSPs)
chr1 (17-201)||(10649527-10649714)
chr1 (75-133)||(36755247-36755304)
chr1 (219-259)||(17088769-17088809)
[»] chr3 (1 HSPs)
chr3 (15-58)||(27175400-27175443)
[»] scaffold1190 (1 HSPs)
scaffold1190 (70-107)||(1327-1364)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 4 - 411
Target Start/End: Original strand, 23135231 - 23135640
Alignment:
Q  4 gatggacatcatcactctgaccaattttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcagaaa 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23135231 gatggaca-catcactctgaccaattttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcagaaa 23135329  T
Q  104 caaagttgttcaaaagcaaagagaatgcaaggggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaat 203  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  23135330 caaagttgttcaaaggcaaagagaatgcaacgggtcattctcaaagaagtaaatgatcattctagtactatttaatggaattatccattagaggcaaaat 23135429  T
Q  204 atttcaaacttgaacaaagtttctcaaagata-ttttatgcgttgacacctcttcaaacaatatatctttt-ttctcttctatttaagaacctaagcagt 301  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  23135430 atttcaaacttgaacaaagtttctcaaaaacatttttatgcgttgacacctcttcaaataatatatcttttattctcttctatttaagaacctaagcagt 23135529  T
Q  302 ttgaagaactcatgagacttcatgtaattttacaaatgacaaagttttgtcaaattatatagcgcacaaacactt-nnnnnnnttcttacaaactttcgt 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||    
T  23135530 ttgaagaactcatgaaacttcatgtaattttacaaatgacaaagttttgtcaaattatatagcgcacaaacacttaaaaaaaattcttataaactttcgt 23135629  T
Q  401 atcttagattt 411  Q
    |||||||||||    
T  23135630 atcttagattt 23135640  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 8309359 - 8309395
Alignment:
Q  71 tacagtttgtcttcttctaaccacgtgcagaaacaaa 107  Q
    |||||||| |||||||||||||||||| |||||||||    
T  8309359 tacagtttttcttcttctaaccacgtgtagaaacaaa 8309395  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 263
Target Start/End: Complemental strand, 19990598 - 19990359
Alignment:
Q  28 ttttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcag----aaacaaagttgttcaaaagcaaa 123  Q
    ||||||||| |||||||||||||| ||||||  ||||| ||  ||| ||||||||||||||||||||||| ||    |||||||||| |||||| |||||    
T  19990598 ttttgtcttcttctgaaggaacgtcgctttcaagttctaatcgtactgtttgtcttcttctaaccacgtgaagaaacaaacaaagtttttcaaaggcaaa 19990499  T
Q  124 gagaatgcaaggggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagt 223  Q
     |||||||||    || ||| || | ||| ||| |||| || ||||||||||  |   ||||| |||||| ||| ||| ||||||||||  || |||||     
T  19990498 aagaatgcaacaaatcgttcccatataagcaaaggatccctatagtactattcgacaaaattacccattataggaaaagtatttcaaacccgatcaaagc 19990399  T
Q  224 ttctcaaagatattttatgcgttgacacctcttcaaacaa 263  Q
    ||||||| ||   ||||||| |||||||| ||||||||||    
T  19990398 ttctcaaggaagatttatgcattgacaccccttcaaacaa 19990359  T

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Target: scaffold0466 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 4669 - 4891
Alignment:
Q  15 tcactctgaccaattttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcagaaacaaa-----gt 109  Q
    ||||||||||||||||||||||||| |   |||||||  |||||| ||||| ||  |||  ||||||||||| | |||| ||| | |||||||     ||    
T  4669 tcactctgaccaattttgtcttatttttttggaacgtcactttctagttcttatagtactttttgtcttcttttgaccatgtgaaaaaacaaacaaaagt 4768  T
Q  110 tgttcaaaagcaaagagaatgcaaggggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttca 209  Q
    | ||| || |||||||||||| ||    |||||| |||||||| |||| ||| |||||| |||||| ||   |||||||||||||||| |||||||||||    
T  4769 t-ttccaaggcaaagagaatgaaacatatcattcccaaagaagcaaataatctctctagaactattcaacaaaattatccattagaggaaaaatatttca 4867  T
Q  210 aacttgaacaaagtttctcaaaga 233  Q
    ||| | | ||||||||||||||||    
T  4868 aacctaatcaaagtttctcaaaga 4891  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 25621964 - 25621745
Alignment:
Q  17 actctgaccaattttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcagaaacaaagt---tgtt 113  Q
    ||||||||||||||| |||| || ||  |||| || ||||||  ||||||||| |||  ||||||||||| | |||| ||| | |||||||     | ||    
T  25621964 actctgaccaattttctcttcttatgttggaatgtcgctttccagttctgattgtactttttgtcttcttttgaccatgtgaaaaaacaaacaaaatttt 25621865  T
Q  114 caaaagcaaagagaatgcaaggggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaact 213  Q
    |||| |||||||||||  ||    |||||  |||||||| |||| ||| |||||| |||||| || | |||||||||||||||| ||||||||||||||     
T  25621864 caaaggcaaagagaataaaacacatcatttccaaagaagcaaataatctctctagaactattcaacgaaattatccattagaggaaaaatatttcaaacc 25621765  T
Q  214 tgaacaaagtttctcaaaga 233  Q
    | |  |||||||||||||||    
T  25621764 taatgaaagtttctcaaaga 25621745  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 25809205 - 25809117
Alignment:
Q  145 caaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaaga 233  Q
    |||||||| |||| ||| |||||| |||||| || | |||||||||||||||| |||||||||||||| | | ||||||||| ||||||    
T  25809205 caaagaagcaaataatctctctagaactattcaacgaaattatccattagaggaaaaatatttcaaacctaatcaaagtttcccaaaga 25809117  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 10516770 - 10516850
Alignment:
Q  27 attttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcagaaacaaa 107  Q
    |||||||||| |||||| |||| |||| |||   ||||||||   || |||||||||||||| ||||||||||||| ||||    
T  10516770 attttgtcttcttctgatggaaggttgtttttgagttctgatagcactgtttgtcttcttctgaccacgtgcagaagcaaa 10516850  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 18114842 - 18114670
Alignment:
Q  28 ttttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcagaaacaaagttgttcaaaagcaaagaga 127  Q
    ||||||||| || | |||||||| |||||||  ||||||||  ||  |||||||||||||| |||||||||| |||||||| | |||||| ||||| |||    
T  18114842 ttttgtcttcttttaaaggaacgctgctttcaagttctgatcgtagtgtttgtcttcttctgaccacgtgca-aaacaaagcttttcaaaggcaaataga 18114744  T
Q  128 atgcaaggggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaa 201  Q
    ||||||  | | ||||  ||||||| ||| ||   ||||||||||||| || |  | |||||||||||||||||    
T  18114743 atgcaacagattattccaaaagaagcaaaagaaacctctagtactattcaacgatactatccattagaggcaaa 18114670  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 29966494 - 29966538
Alignment:
Q  63 tctgattatacagtttgtcttcttctaaccacgtgcagaaacaaa 107  Q
    |||||| ||||| |||||||||||||||||||||| |||| ||||    
T  29966494 tctgataatacaatttgtcttcttctaaccacgtgtagaatcaaa 29966538  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 1185826 - 1185922
Alignment:
Q  99 agaaacaaagttgttcaaaagcaaagagaatgcaaggggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattaga 195  Q
    |||||||||||| || |||  |||||||||| ||| || ||||||||||||||| ||||||   ||||| ||||||| |||| ||||||||||||||    
T  1185826 agaaacaaagtttttgaaagacaaagagaatacaacggatcattctcaaagaagaaaatgaaacctctaatactattcaatgaaattatccattaga 1185922  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 406
Target Start/End: Original strand, 24715982 - 24716315
Alignment:
Q  79 gtcttcttctaaccacgtgcagaaa----caaagttgttcaaaagcaaagagaatgcaaggggtcattctcaaagaagtaaatgatcgctctagtactat 174  Q
    |||||||||| ||||||||||||||    |||||   ||||||  |||||||||| |||  | ||||||  ||||||||||| |||| |||||||| |||    
T  24715982 gtcttcttctgaccacgtgcagaaataaacaaagaatttcaaagtcaaagagaattcaactgatcattccaaaagaagtaaaagatccctctagtaatat 24716081  T
Q  175 ttaatggaattatccattagaggcaaaatatttcaaact-tgaacaaagtttctcaaagatat-tttatgcgttgacacctcttcaaacaatatatcttt 272  Q
    | ||  ||||||||| ||| ||||||| |||| |||||  ||| ||||| ||| ||| || |  |||||| |||| ||||||||||||||||   |||||    
T  24716082 tcaacagaattatcc-ttaaaggcaaagtatt-caaacactgatcaaagcttcgcaaggaaaaatttatgtgttggcacctcttcaaacaattactcttt 24716179  T
Q  273 t-ttctcttctatttaagaacctaagcagtttgaagaac--tcatgagacttcatgtaattttacaaatgacaaagttttgtcaaattatatagcgcaca 369  Q
    | |||||| ||||||||| |||| ||||||| |||||||    |||| || |||||||||||||||| |  ||||    ||| ||||||| |||||||||    
T  24716180 tattctctcctatttaaggacctgagcagttagaagaacaaaaatga-acatcatgtaattttacaagttccaaaaccctgtaaaattatgtagcgcaca 24716278  T
Q  370 aacacttnnnnnnnttcttacaaactttcgtatctta 406  Q
    |||||||       | ||||||||||||| |||||||    
T  24716279 aacacttaaataaatacttacaaactttcatatctta 24716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 17651276 - 17651311
Alignment:
Q  71 tacagtttgtcttcttctaaccacgtgcagaaacaa 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  17651276 tacagtttgtcttcttctaaccacgtgcagaaacaa 17651311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 19053325 - 19053281
Alignment:
Q  63 tctgattatacagtttgtcttcttctaaccacgtgcagaaacaaa 107  Q
    ||||||| || ||||| ||||||||| ||||||||||||||||||    
T  19053325 tctgattgtatagtttatcttcttctgaccacgtgcagaaacaaa 19053281  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 33546228 - 33546129
Alignment:
Q  163 ctctagtactatttaatggaattatccattagaggcaaaatatttcaaacttgaacaaagtttctcaaagatattttatgcgttgacacctcttcaaaca 262  Q
    ||||| ||||||| ||| |||||||||||||||| |||||  |||||||| ||| ||||| ||||||| ||   |||||| |||||||| ||||||||||    
T  33546228 ctctattactattcaattgaattatccattagagacaaaa-ctttcaaacctgatcaaagcttctcaaggaagatttatgtgttgacacttcttcaaaca 33546130  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 10649527 - 10649714
Alignment:
Q  17 actctgaccaattttgtcttattctgaaggaacgttgctttcttgttctgattatacagtttgtcttcttctaaccacgtgcagaaa----caaagttgt 112  Q
    ||||||||||||| | |||| || ||||||||||  |||||   ||| ||||  ||| |||||| ||||||| | ||||||||||||    |||| || |    
T  10649527 actctgaccaattctatcttcttatgaaggaacgacgcttttaagttttgatcgtactgtttgttttcttctgatcacgtgcagaaataaacaaaatt-t 10649625  T
Q  113 tcaaaagcaaagagaatgcaaggggtcattctcaaagaagtaaatgatcgctctagtactatttaatggaattatccattagaggcaaa 201  Q
    ||||| ||||||||||||||| |  ||||||  ||||||| |||||||| |||| ||| |||| ||   |||||||||| |||||||||    
T  10649626 tcaaaggcaaagagaatgcaatgcatcattccaaaagaagcaaatgatctctctggtattattcaacaaaattatccatcagaggcaaa 10649714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 36755247 - 36755304
Alignment:
Q  75 gtttgtcttcttctaaccacgtgcagaaacaaagttgttcaaaagcaaagagaatgcaa 133  Q
    |||||||||||||| |||||||||| |||||||| | |||||| ||||| |||||||||    
T  36755247 gtttgtcttcttctgaccacgtgca-aaacaaagcttttcaaaggcaaatagaatgcaa 36755304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 17088769 - 17088809
Alignment:
Q  219 aaagtttctcaaagatattttatgcgttgacacctcttcaa 259  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  17088769 aaagtttctcaaagattattaatgcgttgacacctcttcaa 17088809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 27175443 - 27175400
Alignment:
Q  15 tcactctgaccaattttgtcttattctgaaggaacgttgctttc 58  Q
    |||||||||||||||||||||| ||||||||||| || ||||||    
T  27175443 tcactctgaccaattttgtcttcttctgaaggaatgtcgctttc 27175400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 1364 - 1327
Alignment:
Q  70 atacagtttgtcttcttctaaccacgtgcagaaacaaa 107  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  1364 atacagtttgtcctcttctgaccacgtgcagaaacaaa 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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