View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5254_high_7 (Length: 246)
Name: NF5254_high_7
Description: NF5254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5254_high_7 |
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| [»] scaffold0029 (1 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: scaffold0029 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 57389 - 57532
Alignment:
| Q |
38 |
ttgactgatctcagtgaatggatttaacacatgggagggcagtgaactaaaagcacttgggagtaagtgctccatgaaaacataattatcatgacttttc |
137 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
57389 |
ttgactaatctcagtgagtggatttaacacatgggagggcagtgaactaaacgcacttgggagtaagtgctccatgaaaacatgattatcatgacttttc |
57488 |
T |
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| Q |
138 |
attccaattactcttccagttttaacatcagcacacctgcccaa |
181 |
Q |
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| T |
57489 |
attccaattacccttccagttttaacatcggcacacctgcccaa |
57532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 10799540 - 10799683
Alignment:
| Q |
38 |
ttgactgatctcagtgaatggatttaacacatgggagggcagtgaactaaaagcacttgggagtaagtgctccatgaaaacataattatcatgacttttc |
137 |
Q |
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| T |
10799540 |
ttgacttatctcagttagtggatttaacacatgggagggcagtgaactaaacgcacttgggagtaagtgctccatgaaaacatgattatcatgacttttc |
10799639 |
T |
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| Q |
138 |
attccaattactcttccagttttaacatcagcacacctgcccaa |
181 |
Q |
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| T |
10799640 |
attccaattacccttccagttttaacatcggcacacctgcccaa |
10799683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 28955590 - 28955447
Alignment:
| Q |
38 |
ttgactgatctcagtgaatggatttaacacatgggagggcagtgaactaaaagcacttgggagtaagtgctccatgaaaacataattatcatgacttttc |
137 |
Q |
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||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
28955590 |
ttgactgatctcagtaagtggatttaacacatgggagggtagtgaactaaacgcacttggtagtaagtgctccatgaaaacatgattatcatgacttttc |
28955491 |
T |
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| Q |
138 |
attccaattactcttccagttttaacatcagcacacctgcccaa |
181 |
Q |
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| T |
28955490 |
attccaattacccttccagttttaacatcggcacacctgcccaa |
28955447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7431396 - 7431436
Alignment:
| Q |
1 |
tttgaatgctcaatgaatattcattgcagaatgctctttga |
41 |
Q |
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| T |
7431396 |
tttgaatgctctatgaatattcattgcagaatgctctttga |
7431436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14605785 - 14605745
Alignment:
| Q |
1 |
tttgaatgctcaatgaatattcattgcagaatgctctttga |
41 |
Q |
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| T |
14605785 |
tttgaatgctctatgaatattcattgcagaatgctctttga |
14605745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 47472 - 47439
Alignment:
| Q |
183 |
atagaattatacttgtcatttctatagttagccc |
216 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
47472 |
atagaattatacttgtcatttctatggttagccc |
47439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 28247310 - 28247277
Alignment:
| Q |
183 |
atagaattatacttgtcatttctatagttagccc |
216 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
28247310 |
atagaattatacttgtcatttctatggttagccc |
28247277 |
T |
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