View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5254_low_5 (Length: 255)
Name: NF5254_low_5
Description: NF5254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5254_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 3642495 - 3642718
Alignment:
| Q |
14 |
agacgttttcatgaatctggaaaccatttaaaagagcaccgaatatggcaatatttggttttattgacattgtcttcattagtttttccgtctcttggaa |
113 |
Q |
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| T |
3642495 |
agacgttttcatgaatctggaaaccatttaaaagagcaccgaatatggcaatatttggttttattgacattgtcttcattagtttttccgtctcttggaa |
3642594 |
T |
|
| Q |
114 |
attacctgcccgaatcaaaagatcaaccgtgaatcataacgctctctttctggcactaaaccatacctctttgttatcaggttaaattgtctttgagcct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3642595 |
attacctgcccgaatcaaaagatcaaccgtgaatcataacgctctctttctggcactataccatacctctttgttatcaggttaaattgtctttgagcct |
3642694 |
T |
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| Q |
214 |
cttcaaccaatccaacatgactac |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
3642695 |
cttcaaccaatccaacatgactac |
3642718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 9807041 - 9807261
Alignment:
| Q |
18 |
gttttcatgaatctggaaaccatttaaaagagcaccgaatatggcaatatttggttttattgacattgtcttcattagtttttccgtctcttggaaatta |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||| | |
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| T |
9807041 |
gttttcatgaatctggcaaccatttaaaagagcaccccatatggcaatatttggtcgtattgacattgtctccattagtttttccgcctctctaaaatga |
9807140 |
T |
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| Q |
118 |
cctgcccgaatcaaaagatcaaccgt-gaatcataacgctctctttctggcactaaaccatacctctttgttatcaggttaaattgtctttgagcctctt |
216 |
Q |
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||||||||| |||||||||||||| | || ||| ||||| |||| |||| || |||||| |||||||| || |||||||||||| |||||||||||| |
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| T |
9807141 |
cctgcccgactcaaaagatcaaccatacaactatagtgctctttttccggcagtataccataactctttgtcataaggttaaattgtttttgagcctctt |
9807240 |
T |
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| Q |
217 |
caaccaatccaacatgactac |
237 |
Q |
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| ||||||||||||||||||| |
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| T |
9807241 |
cgaccaatccaacatgactac |
9807261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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